Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0331 ATGGATTCTACTTCTTCCTCTACTGTTCAGCCTTCTTCTGTTACTCTAAATTCTGCAAGCAAGACAAGTCCAGTGGTGTTTAATCATGTAATTTCGGTGAAGCTTGACGATCGAAATTTTTTGTTGTGGCATCATCAAGTCAGTGCTGCCATTGAAGGTCACGATCTGTTGCATATTGTTGAAGGAAAGAATGTTCCTCTTCAATATCTTACTCCAGATGATGCGAAATCCAGCAAGGAGAATCCTGAGTTCACTATTTGGCGCAAGCAAGATAAGTTGCTCCTTTCTTGGCTTTTATCTTCAATGTCTGAATCTATGCAAACTCGTTTAGTAGGATGTAAACATTCCTTTCAGCTTTGGACTAAGATTGAGGAGAGTTTTGCTAATCATACTCGTGCAAAAGTGCATTTGTATCTCACTGAGTTTCGTAGCATTAAGAAAGGAACTAGATCTATGTCTGAATATTTGCTTAGAATCAAGGCTCTTGTTGATTCTCTAGCTGCTGTAGGAAATCCTATTGCTGAATCAGATCAGATTCATGTCATACTTAATGGTTTAGGTACTGGTTATGATGCGTTTGTTACCTCCATTAATACTAGAAGAGAAGATTACTCTGTAACTGAGATTGAATCCTTGTTGCTTGCTCAAGAGATTCGTGTTGATAATTCTATGTCTTCTACCACTGAGACTCTTTCTGTTAATGTAGCTTCTACTGATTTAAAAGATAAGAGCAGTGGTAACTCTGGTCAGTCTTCTCAACAGaataatttttctaataatGGTTACAGAGGTAGAGGAGGaaggaataataataatggttACAGAGGTAGAGGAGGAAGGAACAATAATGGTTACAGAGGAGGATATAATGGTGGCTATCAAGGTTATCAACCTCAGCAGGGAAGCAGACCTACTGTGGTTTGCCAATTGTGTAACAAAACTGGTCATCATGTGACTAGTTGCTATAAACGGTTTGATCATAACTTTGTTGGCTTTCAGGCACAAAACTATTCTCAGTCTAATAACTACAGACCTCCTATGATGCAAGCTCACATGGCAGTTCCCGAAACCTTGTATGATCCTGCGTGGTATCCTGATTCTGGAGCCACTAATCATGTTACTGCTGATGCTCAGAACCTGATGAACAGTGCAGATTATTCAGGACAGGAGCAACTTCATGTTGGTAATGGAGCAGGTTTGAATATTGAACACATTGGACATTCATCTCTTAAATCTCCTTTCAATTCTTCTGTTACTTTACATCTTAATAATCTTTTACATGTTCCAAATATAACCAAAAATCTTGCTACCAAGCAAGTTCTTCTTCGAGGAACTATTAAGGGTGATGGCTTATACTCGTTTGATAGCTTTCCGGTTTCTTCTGGTTCAGGATGTCAATCATCTCGGCCTTCTGCTAATTTGGCATCCTCTTCAACTTCCGTTTTGTCTCTTAATAAACCTGTTTGTCTTCATGCTGTTTATGTGTCAAGAGATGTCAAGTTCAATGAGAATTTATTTCCTTATGCTTCCAAAATTTCTAAAAAGTCTCCTCAAAATGAAGTTGGTTCTCTGCCTTCTGCAATTCCACCAACTATGTCCAATTGTGTTCATTCTGCTCCTTCAGTAATTGTCACTAATGCTTCAGGTTCTAGTGTTGTTGAGGGAAGTACAGGTACTGCTGCAAGTTCTGGTTCTGATTTGCCTTCTCCAGTTCAAGTTCCTTTTGCTGAAGCACCTTCTTCAAGCTCATCAGATCATGTTCCTACTGCCTCTGCTGATTCCTTGTCAGTTTCTGTTCCTGGTTCTCAATCTCAAAATCCAGCTTCTACTGCTGTTAATAATGGTGCCAATACTCACTCTATGACAACAAGGGCTAAAGCAGTAGAAGCTCTGCCTCTGCCTGTGCCTCCAAGAGCTGTCCTCCTCGAGGAAGATGAAAAACTGCGTCTACTTGTCAAACAATATGGCGCCCACAATTGGAATTCTATTGCTCAAAACCTCCCAGGAAGATCCGGGAAGAGTTGCAGATTAAGGTGGTTTAACCAGCTTGATCCTCGGATAAACAGAAAGCCATTTacagaagaagaggaagaaaggttACTGGCGGCTCATCGCATTCATGGCAACAAGTGGGCCCTCATAGCCAGGCTTTTCCCTCGTCGAACTGATAACGCCGTCAAGAACCACTGGCACCTGCTTCCAATACCATTACCAACTCCTTCTGCCGCTGATATTGGGATActgaacaacaacaacaaggaCTCCTCACTCATGACGAGTACTAATTTGTGCAATCACTCATCCTCCACATATACCAGGCTTTCTACGCAACAATTACAGCAACCACATCATCAACACAAGCAACTTCCTTTCATTGATTTTCTTGGCGTGGGTGTCACCTCTTCATAA 2409 0.3985 MDSTSSSTVQPSSVTLNSASKTSPVVFNHVISVKLDDRNFLLWHHQVSAAIEGHDLLHIVEGKNVPLQYLTPDDAKSSKENPEFTIWRKQDKLLLSWLLSSMSESMQTRLVGCKHSFQLWTKIEESFANHTRAKVHLYLTEFRSIKKGTRSMSEYLLRIKALVDSLAAVGNPIAESDQIHVILNGLGTGYDAFVTSINTRREDYSVTEIESLLLAQEIRVDNSMSSTTETLSVNVASTDLKDKSSGNSGQSSQQNNFSNNGYRGRGGRNNNNGYRGRGGRNNNGYRGGYNGGYQGYQPQQGSRPTVVCQLCNKTGHHVTSCYKRFDHNFVGFQAQNYSQSNNYRPPMMQAHMAVPETLYDPAWYPDSGATNHVTADAQNLMNSADYSGQEQLHVGNGAGLNIEHIGHSSLKSPFNSSVTLHLNNLLHVPNITKNLATKQVLLRGTIKGDGLYSFDSFPVSSGSGCQSSRPSANLASSSTSVLSLNKPVCLHAVYVSRDVKFNENLFPYASKISKKSPQNEVGSLPSAIPPTMSNCVHSAPSVIVTNASGSSVVEGSTGTAASSGSDLPSPVQVPFAEAPSSSSSDHVPTASADSLSVSVPGSQSQNPASTAVNNGANTHSMTTRAKAVEALPLPVPPRAVLLEEDEKLRLLVKQYGAHNWNSIAQNLPGRSGKSCRLRWFNQLDPRINRKPFTEEEEERLLAAHRIHGNKWALIARLFPRRTDNAVKNHWHLLPIPLPTPSAADIGILNNNNKDSSLMTSTNLCNHSSSTYTRLSTQQLQQPHHQHKQLPFIDFLGVGVTSS 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0331 802 Pfam Myb-like DNA-binding domain 689 731 IPR001005 -
Sto5g0331 802 Pfam Myb-like DNA-binding domain 643 683 IPR001005 -
Sto5g0331 802 CDD SANT 700 733 IPR001005 -
Sto5g0331 802 ProSiteProfiles Myb-like domain profile. 643 683 IPR001005 -
Sto5g0331 802 CDD SANT 643 681 IPR001005 -
Sto5g0331 802 Pfam gag-polypeptide of LTR copia-type 87 222 - -
Sto5g0331 802 PANTHER - 27 413 - -
Sto5g0331 802 Gene3D - 642 688 - -
Sto5g0331 802 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 643 683 IPR017930 -
Sto5g0331 802 MobiDBLite consensus disorder prediction 237 299 - -
Sto5g0331 802 MobiDBLite consensus disorder prediction 237 267 - -
Sto5g0331 802 PANTHER - 27 413 - -
Sto5g0331 802 MobiDBLite consensus disorder prediction 553 616 - -
Sto5g0331 802 Gene3D - 691 732 - -
Sto5g0331 802 ProSiteProfiles Myb-like domain profile. 684 734 IPR001005 -
Sto5g0331 802 SMART sant 688 736 IPR001005 -
Sto5g0331 802 SMART sant 636 685 IPR001005 -
Sto5g0331 802 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 684 738 IPR017930 -
Sto5g0331 802 SUPERFAMILY Homeodomain-like 643 730 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0331 Sto-Chr5 1983821 1989663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0331 644 733 MYB Transcription Factor Family AT1G17950 82.222 9.42e-49 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sto5g0331 Retrotran_gag_2 5.6e-20 CL0523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0331 K09422 - lang:109362641 209.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2820 9 29770735 29774403 Sto5g0331 5 1983821 1989663 CCT