Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0330 ATGTCGTTAGTTGGATCTGCAGAGCTGGCTGATGCACCATATAGAAATGCCAAGCTCTACTCAATAAAGGGAACGGATGTTAGGCCTGGTTTTTCCTCCCAAATTTTTGGTCCTGATAAGCACAGAACCATGTACATGACAGAAACTTACTCCAGTGAGAGTTATGAGAAGTACTTCCATGATTCACCATCAGAAGAACTGATAGAAGCATCTAGTTCTGGCATCTCAGGAAACTCGCTGCCTGATGGTGCCTTTTCTTATCCACTAAGAGCTAGTTCAGGAGCTTCTATGCTTACTAATAATCCATTTGATACTTCTTTGATGTCCACGAGACATCATGATGATTTTCAGTCCAATTTTGCATCAGATTTCTTGGAAAATGGCAGCCCAGATCCACTTGACTTTGATGGTGAAATGAGATTAAAACTACAAGAATTAGAGAAGGCACTGCTCAATGATAACGaagatgaggaggaggaggaagacaTGTTTGCAACTGTTCAAAGCATGGAGATTGATGCTCAGTGGGCTGATCCTATTCAGACTATTTTGCAACATGACTCACCAAAGGAATCTTCATCCTCAGATTCCAATCTTAGTAGCATCAGTAGCAAAGAGATATTACAGTCTCCTCGGACTCCCAAGCAATTGCTATTGGAATGTGCAGCTGCAATGTCAGAAGTAAATGTAGAGGAAGCATCATCTATGATTAATGAACTCCGGCAGATGGTATCAATTCAGGGAGATCCTTCCCAAAGGATTGCAGCCTATATGGTGGAAGGACTTGCAGCTCGCATGGCTGAATCTGGAAGCAGTATTTATAAAGCATTGAGATGCAAGGAACCTCCTTCTTCAGACCGCCTAGCTGCCATGCAGATACTGTTTGAGGTGTGCCCATGTTTTAAATTTGGATTCATTGCTGCAAATGGTGCAATAACAGAGGCAGTTAAAGATGAAAAGAAGGTTCATATAATAGATTTTGACATCAATCAAGGAAGCCAATACATTACTTTGATACAAGCGCTTGCTTCAAGACCTGGTAAGCCACCCCGTGTGAGATTGACCGGGGTTGATGATCCTGAGTCTGTCCAGCGATCTGTTGGAGGCCTAAAGATCATTGGACAAAGACTTGAAAAACTGGCAGAAGTACTTGGATTGCCATTTGAATTTCAAGCAGTGGCATCAAGGTCTTCACTTGTCACTCCCTCAATGCTCAATTGCCGTCCTGGGGAAGCACTTGTGGTGAATTTTGCATTCCAGCTTCATCACATGCCAGATGAGAGTGTTTCAACAGTAAATGAACGAGACCAACTTCTACGCATGGTTAAAGGCCTGAATCCAAAACTCGTAACCGTGGTGGAACAAGATGTGAACACCAATACCACTCCATTTTTCCCGAGATTTGTTGAAGCCTACAATTATTACTCTGCTGTGTTTGAGTCACTGGATGCAACTCTTCCTAGAGAGAGTCAGGACAGGATGAATGTTGAAAGGCAATGCTTAGCTAGGGACATTGTCAACATTGTTGCATGCGAAGGTGAGGATAGGATAGAACGGTATGAAGTTGCCGGAAAATGGAGAGCAAGGATGATAATGGCTGGATTCACTTCATCCCCAATGAGCGCTAATGTAACTGATGCAATTCGGAAACTTATTACGCAGTATAGTGACAGGTATAAGATAAAGGATGTGATGGGTGCACTTCATTTTGGATGGGAAGACAAGAACTTGATTGTTGCTTCAGCATGGAGCAATTTTGGTCTATGTGAGGAATTTGTTATGAACAACATGCATGGAATATTTGAAGTTGTTGCACAGTCTCTCTATGTGGATCAATACAATGACCATGAGGATTTGCTTGATCCAAACTCGAGATTCTGTGCTTAA 1887 0.4176 MSLVGSAELADAPYRNAKLYSIKGTDVRPGFSSQIFGPDKHRTMYMTETYSSESYEKYFHDSPSEELIEASSSGISGNSLPDGAFSYPLRASSGASMLTNNPFDTSLMSTRHHDDFQSNFASDFLENGSPDPLDFDGEMRLKLQELEKALLNDNEDEEEEEDMFATVQSMEIDAQWADPIQTILQHDSPKESSSSDSNLSSISSKEILQSPRTPKQLLLECAAAMSEVNVEEASSMINELRQMVSIQGDPSQRIAAYMVEGLAARMAESGSSIYKALRCKEPPSSDRLAAMQILFEVCPCFKFGFIAANGAITEAVKDEKKVHIIDFDINQGSQYITLIQALASRPGKPPRVRLTGVDDPESVQRSVGGLKIIGQRLEKLAEVLGLPFEFQAVASRSSLVTPSMLNCRPGEALVVNFAFQLHHMPDESVSTVNERDQLLRMVKGLNPKLVTVVEQDVNTNTTPFFPRFVEAYNYYSAVFESLDATLPRESQDRMNVERQCLARDIVNIVACEGEDRIERYEVAGKWRARMIMAGFTSSPMSANVTDAIRKLITQYSDRYKIKDVMGALHFGWEDKNLIVASAWSNFGLCEEFVMNNMHGIFEVVAQSLYVDQYNDHEDLLDPNSRFCA 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0330 628 Pfam GRAS domain family 215 583 IPR005202 -
Sto5g0330 628 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 10 584 IPR030011 GO:0003700|GO:0005634
Sto5g0330 628 ProSiteProfiles GRAS family profile. 205 584 IPR005202 -
Sto5g0330 628 Coils Coil 140 163 - -
Sto5g0330 628 MobiDBLite consensus disorder prediction 186 206 - -
Sto5g0330 628 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 10 584 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0330 Sto-Chr5 1968319 1970471 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0330 1 583 GRAS Transcription Factor Family AT1G21450 63.575 0.0 723
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Sto5g0330 GRAS 6.1e-137 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0330 - - gmx:100798897 890.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0330 5 1968319 1970471 Sto9g2819 9 29758529 29760474 CCT
Sto5g0330 5 1968319 1970471 Sto5g0330 5 1968319 1970471 ECH