LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto5g0290	ATGGCTATTCGGGTTACTGTTAGCTATTCTGGCTATATCGCCCAAAACCTGGTGTCGTCGGTTGGTATTCGAGTGGGTACTACCCGTTGCTTCCAAGAATGCTGGATACGGTCACGCATTTTCTGTCCTGCCCAACAGAAACCTGATATTGATTCCTCCGGCGGCGTGCGCAATTACCATTCCGATTTCAGACGTCCCAAATCCAATTCATGGGCTAAGAATTCAGCCTCTGCGTATACGACTATAGCCGCAGGAATTCTAGGTGATAATTGCCAAAACCCGATCGTATTGGGTTTGATTTCGTTGATAAATTCAACGGGGTGTCTATCCAGTTTGTCTGCTACGAGTACGCCTATATGCGGTATTTCTCCATTTAAACCCGCATCGATCATACCCTTTTTACAGGGGTCCAAGTGGCTTCCTTGCAATCAGTCTATTCCCGTTCCTACAAGCTGTTCGGTTGATAAAGCTAGAACACACTGTTTTAATGGTGATGATAATGTGGAATCAAGATACAGTTCTGAGAAGTTTGAGAAGACAAGTTGGCTCTCGCGCTTGTTGGGTAGCTGTTCAGAGGATGCGAAAGCTGTGTTTACTGCAGTGACTGTTAATTTGCTCTTCCGATCCTTCTTGGCTGAACCGAGATCGATATCCTCGTCTTCTATGTACCCAACCCTGGATGTGGGCGACCGTATTTTAGCGGAGAAGGTTTCCTTCTTCTTTAGAAAGCCTGATGTTTCAGATATAGTAATTTTTAAGGTGCCTCCTATCTTACAGCTTTTTGGTTACGGCTCATCTGATGTATTTGTAAAAAGGATTGTGGCAAAAGCTGGGGACTGCGTTGAGGTTCGCGATGGAAAACTACTGGTGAATGGCATTGCTCAAGAAGAGGAATTTGTTTTAGAGCCACCTGCTTATGAGATGAAACCGCTGGTGGTACCAGAAGGGTATGTGTTTGTGATGGGAGACAATCGCAACAACAGCTGTGATTCACATAACTGGGGTCCTCTCCCTGTCAAGAACATTGTTGGTAGATCCATGTTGCGCTACTGGCCTCCTTCCAAAATATCCGACACTCACTATGAACCACCGCTTCCAAACAACTATGTCGCAATTTCTTGA	1122	0.4537	MAIRVTVSYSGYIAQNLVSSVGIRVGTTRCFQECWIRSRIFCPAQQKPDIDSSGGVRNYHSDFRRPKSNSWAKNSASAYTTIAAGILGDNCQNPIVLGLISLINSTGCLSSLSATSTPICGISPFKPASIIPFLQGSKWLPCNQSIPVPTSCSVDKARTHCFNGDDNVESRYSSEKFEKTSWLSRLLGSCSEDAKAVFTAVTVNLLFRSFLAEPRSISSSSMYPTLDVGDRILAEKVSFFFRKPDVSDIVIFKVPPILQLFGYGSSDVFVKRIVAKAGDCVEVRDGKLLVNGIAQEEEFVLEPPAYEMKPLVVPEGYVFVMGDNRNNSCDSHNWGPLPVKNIVGRSMLRYWPPSKISDTHYEPPLPNNYVAIS	373

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto5g0290	373	CDD	S26_SPase_I	213	345	IPR019533	GO:0004252\|GO:0006465
	Sto5g0290	373	SUPERFAMILY	LexA/Signal peptidase	208	357	IPR036286	-
	Sto5g0290	373	ProSitePatterns	Signal peptidases I serine active site.	219	226	IPR019756	GO:0004252\|GO:0016021
	Sto5g0290	373	PANTHER	SIGNAL PEPTIDASE I	1	372	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Sto5g0290	373	Pfam	Signal peptidase, peptidase S26	194	351	IPR019533	GO:0004252\|GO:0006465
	Sto5g0290	373	TIGRFAM	sigpep_I_bact: signal peptidase I	196	352	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Sto5g0290	373	PANTHER	THYLAKOIDAL PROCESSING PEPTIDASE 2, CHLOROPLASTIC-RELATED	1	372	-	-
	Sto5g0290	373	ProSitePatterns	Signal peptidases I signature 3.	318	331	IPR019758	GO:0004252\|GO:0016021
	Sto5g0290	373	Gene3D	Umud Fragment, subunit A	207	362	-	-
	Sto5g0290	373	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	210	226	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Sto5g0290	373	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	269	281	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Sto5g0290	373	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	313	332	IPR000223	GO:0006508\|GO:0008236\|GO:0016020

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto5g0290	Sto-Chr5	1728730	1731003	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sto5g0290	222	352	MADS-box Gene Family	AT1G29960	33.835	1.16e-14	68.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto5g0290	K03100		-	zju:107420354	485.723

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Sto5g0290	5	1728730	1731003	Sto5g0290	5	1728730	1731003	ECH