Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0272 ATGAACCCTATGCAATCGGATCTGAATATTCCTTCCCTTTGTGCGATCCAAATTAGGCAGTGCGGTGGCCTTGATTTAGGTGTGCTTGAGCGTCATTGTTTAGTATGTCTGGATATGATTAGAGGAAAGAAGCGAAGAGAGCAACCCCAGCCTCCTTGTCTAACGGATGTGGAGCCGGATAAACTAAGTTGCTTACCGGGCCATGTCATAGATCAAATTCTGTCACATTTGTCTATTCGGGAAGCAGTGAGGACTAGTGTTTTATCTAGCAAGTGGAGATACAAATGGGCGACATTACCAAATCTTGTGTTTGATAACCAGTGTCTCTCTTTATCTTCCCAAGATCATTCAATTATTAAGAACAAGCTTGTGAGAATTATTGATCATGTGCTTTTGCTTCACTCTGGTGTAATCAACAAGTTCAAGCTCTCCCATCGTGATCTTATTGGTGTGACTGACATTGATCGTTGGACTCTTCATCTAACCAGAAAATCTGTCAAAGAGCTTGTGCTTGAAATCTGGAAAGGCTTCAAGAACTTGAAGAGTCTTGATCTTCAGCATGTTACCTTGGATCAAGatgtgtttgaaaacttgatatctagCTGCCCACTGTTAGAACGTCTAACATTGATGAACTTTGATGGTTTCACTCATCTCAACATTGATGCACCAAATCTCCAGTTTTTTGACATTGGAGGCAAATTTGAGGATGTTAGATTTGAGAACACTTTCCATTTAGCTGTTGTATCCATTGGTTTGTATTTGAACTTTGAAAATGAGAAAAGTAGATGGCCAGGATGTTCAAGCAATTTGCTCAAGTTTTTTGTTCATCTACCTCATTATCTGGCGGTAGGGGTTGTGCCACTAAAGCTTCCTAGACCTTGTGTTGATTTAAGTTATCTTTCCATACGCATAAACTTCAATGATCCGAAGGAAATTTCAGCTGCTTTGTGCCTTTTAAGAAGTTCTCCTAATCTACAAGAACTGGAAGTACTGGCTCGCCCTGAAGAACAACAGACTACTTCGGTCTCGGGAACACAGGCCTACTGCTGGGAGGATGAGTATTGGAATTGTCCAGTGATGCAACTGCGGTTTGTGAGGATAGACGGCATCTCTGGCATCAAACCTGAATTGGATTTTATCAGCTTTCTACTTTTATATTCTCCTGTTCTAGAAAGGATGTCTGTGAAGCCTGCTTCTTCAAATGGAGGGTTAGAGTTGATGAAAGAATTATTGCGCTTCAGGAGAGCTTCAGGACGAGCTGAAATGATATACTTGGACCCTTGA 1287 0.4064 MNPMQSDLNIPSLCAIQIRQCGGLDLGVLERHCLVCLDMIRGKKRREQPQPPCLTDVEPDKLSCLPGHVIDQILSHLSIREAVRTSVLSSKWRYKWATLPNLVFDNQCLSLSSQDHSIIKNKLVRIIDHVLLLHSGVINKFKLSHRDLIGVTDIDRWTLHLTRKSVKELVLEIWKGFKNLKSLDLQHVTLDQDVFENLISSCPLLERLTLMNFDGFTHLNIDAPNLQFFDIGGKFEDVRFENTFHLAVVSIGLYLNFENEKSRWPGCSSNLLKFFVHLPHYLAVGVVPLKLPRPCVDLSYLSIRINFNDPKEISAALCLLRSSPNLQELEVLARPEEQQTTSVSGTQAYCWEDEYWNCPVMQLRFVRIDGISGIKPELDFISFLLLYSPVLERMSVKPASSNGGLELMKELLRFRRASGRAEMIYLDP 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0272 428 SUPERFAMILY RNI-like 159 329 - -
Sto5g0272 428 SUPERFAMILY F-box domain 59 120 IPR036047 GO:0005515
Sto5g0272 428 PANTHER F-BOX/RNI/FBD-LIKE DOMAIN PROTEIN 56 394 - -
Sto5g0272 428 Gene3D Ribonuclease Inhibitor 137 350 IPR032675 -
Sto5g0272 428 Pfam Leucine Rich Repeat 179 203 IPR013101 -
Sto5g0272 428 ProSiteProfiles F-box domain profile. 59 93 IPR001810 GO:0005515
Sto5g0272 428 PANTHER F-BOX PROTEIN-LIKE 56 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0272 Sto-Chr5 1613037 1616421 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0272 57 259 EF-hand Containing Proteins AT5G41840 24.345 1.69e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0272 - - gmx:100782183 631.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0272 5 1613037 1616421 Sto5g0272 5 1613037 1616421 ECH