Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0270 ATGGGTTGGCTTAGCAAAATTTTTAAGGGATCCGACCATAAAATTTCCGAAGGGCATTATAATGCAAACTATAGAGAGGATACTGATTTTTACTTACCATCAACTTCAGGGGATGTCTGGtcagagaatgagaatgaagatATAGATCGTGCTATTGCACTATCTCTTGCAGAGGAAAATCAGAAAGGAAAGAACGTAAATGACTTCAATTCACAATTAGAAGAAGATGAACAACTTGCTAGAGCTTTACAAGAAAGTCTTAATGTTGAGTCTCCACCCAgatatggaaatggaaatatgTATCAACCGATGCCAGCGTATTTCCCAATGGGATCCAGGATTTGTGCTGGTTGCAATACCGAGATTGGTTATGGACGATATCTGAATTGCCTAAGTGCATTTTGGCATCCTGAATGCTTCCGCTGCCGTGCTTGCAACCTGCCCATATCTGATTATGAGTTTTCCACCTCTGGGAATTATCCTTACCATAAAGCATGCTATAAAGAAAACTACCATCCAAAATGTGATGTCTGCAAGCACTTTATTCCAACAAACCCTGCTGGTCTTATTGAATATAGGGCGCATCCTTTTTGGATCCAAAAATATTGCCCTTCCCACGAACATGATGGTACCCCACGCTGTTGCAGCTGTGAGCGTATGGAGCCACGAGAGACAGGATACATTGCTCTTAATGATGGTCGGAAACTATGCCTGGAGTGTCTGGACTCTGCTATCATGGATACAAGCGAATGCCAACCCCTTTATACTGACATACAAAAATTTTATGAAGGTCTGCATATGAGACTGGAACAGCAAGTTCCATTGCTCTTGGTTGAAAGACAAGCGTTGAATGAAGCTAGAGAGGGGGAGAAGAATGGCCACTATCACATGCCTGAGACCAGGGGACTCTGCCTTTCCGAAGAACAGACTATCAGCACTGTCTTGAGGCGACCTAGGTTTGGCACTGGAAACAGAGCAGTAGACATGAAGACACAGCCCTATAAACTGACTCGACGCTGTGATGTGACAGCAATTCTCATTTTGTATGGTCTTCCAAGGTTGCTTACTGGATCGATCCTAGCCCATGAAATGATGCATGCATGGCTGCGACTTAAAGGTAGTGGCTCATATGTGGTTGGAGTCTGA 1146 0.4232 MGWLSKIFKGSDHKISEGHYNANYREDTDFYLPSTSGDVWSENENEDIDRAIALSLAEENQKGKNVNDFNSQLEEDEQLARALQESLNVESPPRYGNGNMYQPMPAYFPMGSRICAGCNTEIGYGRYLNCLSAFWHPECFRCRACNLPISDYEFSTSGNYPYHKACYKENYHPKCDVCKHFIPTNPAGLIEYRAHPFWIQKYCPSHEHDGTPRCCSCERMEPRETGYIALNDGRKLCLECLDSAIMDTSECQPLYTDIQKFYEGLHMRLEQQVPLLLVERQALNEAREGEKNGHYHMPETRGLCLSEEQTISTVLRRPRFGTGNRAVDMKTQPYKLTRRCDVTAILILYGLPRLLTGSILAHEMMHAWLRLKGSGSYVVGV 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0270 381 Gene3D Cysteine Rich Protein 109 189 - -
Sto5g0270 381 PANTHER PROTEIN DA1-LIKE 1 376 - -
Sto5g0270 381 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 107 140 - -
Sto5g0270 381 SMART lim_4 114 166 IPR001781 -
Sto5g0270 381 ProSiteProfiles LIM domain profile. 113 173 IPR001781 -
Sto5g0270 381 Pfam LIM domain 115 169 IPR001781 -
Sto5g0270 381 ProSitePatterns LIM zinc-binding domain signature. 115 149 IPR001781 -
Sto5g0270 381 Pfam Protein DA1 264 374 IPR022087 -
Sto5g0270 381 CDD LIM_DA1 115 167 - -
Sto5g0270 381 Pfam Ubiquitin interaction motif 74 87 IPR003903 -
Sto5g0270 381 Pfam Ubiquitin interaction motif 44 58 IPR003903 -
Sto5g0270 381 Coils Coil 66 86 - -
Sto5g0270 381 SMART uim 43 62 IPR003903 -
Sto5g0270 381 SMART uim 74 93 IPR003903 -
Sto5g0270 381 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 74 93 IPR003903 -
Sto5g0270 381 PANTHER PROTEIN DA1-RELATED 2 1 376 IPR045218 -
Sto5g0270 381 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 43 62 IPR003903 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0270 Sto-Chr5 1600817 1605036 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Sto5g0270 DA1-like 7.9e-56 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0270 - - lja:Lj5g3v0083000.1 679.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0270 5 1600817 1605036 Sto5g0270 5 1600817 1605036 ECH