Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0268 ATGGCAAGTGGGTTTGGCGAATCAACAAGTAGGTCACCCCCAAGCCCTTCCTGCTCCAGCAACAATAATAACAGCGATGCAGGCAATTTTGAATGCAACATTTGCTTtgatttagcacaagaccctatCATCACTCTATGTGGTCATCTCTTCTGTTGGCCTTGTCTTTACAAGTGGCTTCACCTTCACTCACAGTCACGAGAATGCCCGGTGTGCAAGGCCCTCATTGAGGAGGACAAATTGGTTCCTTTATATGGGAGAGGGAAGACATCAACTGACCCAAGGTCAAGGTCTATTCCTGGCATTAATATACCACATCGTCCAGCTGGTCAGAGACCCGAAACTGCTCCACCTCCTGAATCAAATCATTTTCCTCAGCATGGCTTTGGTTTCATGGGTGGGCTGGCAGGGTTTGCCCCAACGGCAACTGCAAGATTTGGGAATTTTACTTTGTCCACAGCATTTGGTGGtttctttccttcctttttcaaCTTTCAAATGCATCCTGGGTTTCATGATGGAGCCATGTATGGTAATCCGGCTGGTTTTCATTATGGATTTTCTAATCCATTTCATGGTGGCCATGCCCATGGATTTTATCCTCAGCACCCGGGTCAAGGACAACAAGATTACTATCTGAGAAGGCTACTTATGCTTGTTGTTTTCTGTGTTCTTCTTGCTTTCATTTGGCAATAG 696 0.4353 MASGFGESTSRSPPSPSCSSNNNNSDAGNFECNICFDLAQDPIITLCGHLFCWPCLYKWLHLHSQSRECPVCKALIEEDKLVPLYGRGKTSTDPRSRSIPGINIPHRPAGQRPETAPPPESNHFPQHGFGFMGGLAGFAPTATARFGNFTLSTAFGGFFPSFFNFQMHPGFHDGAMYGNPAGFHYGFSNPFHGGHAHGFYPQHPGQGQQDYYLRRLLMLVVFCVLLAFIWQ 231
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0268 231 SUPERFAMILY RING/U-box 29 85 - -
Sto5g0268 231 PANTHER OS12G0636000 PROTEIN 2 231 - -
Sto5g0268 231 MobiDBLite consensus disorder prediction 1 20 - -
Sto5g0268 231 CDD RING-HC_AtRMA_like 30 74 - -
Sto5g0268 231 ProSitePatterns Zinc finger RING-type signature. 47 56 IPR017907 -
Sto5g0268 231 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 231 IPR045103 GO:0005783|GO:0006511|GO:0061630
Sto5g0268 231 Pfam Zinc finger, C3HC4 type (RING finger) 30 77 - -
Sto5g0268 231 ProSiteProfiles Zinc finger RING-type profile. 32 73 IPR001841 -
Sto5g0268 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 86 IPR013083 -
Sto5g0268 231 SMART ring_2 32 72 IPR001841 -
Sto5g0268 231 MobiDBLite consensus disorder prediction 86 122 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Sto5g0268 Sto-Chr5 1590638 1591333 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0268 16 214 C3H Transcription Factor Family AT1G19310 66.019 3.00e-87 256
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0268 K10666 - gmx:100527488 370.548
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0268 5 1590638 1591333 Sto5g0268 5 1590638 1591333 ECH