Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sto5g0268 | ATGGCAAGTGGGTTTGGCGAATCAACAAGTAGGTCACCCCCAAGCCCTTCCTGCTCCAGCAACAATAATAACAGCGATGCAGGCAATTTTGAATGCAACATTTGCTTtgatttagcacaagaccctatCATCACTCTATGTGGTCATCTCTTCTGTTGGCCTTGTCTTTACAAGTGGCTTCACCTTCACTCACAGTCACGAGAATGCCCGGTGTGCAAGGCCCTCATTGAGGAGGACAAATTGGTTCCTTTATATGGGAGAGGGAAGACATCAACTGACCCAAGGTCAAGGTCTATTCCTGGCATTAATATACCACATCGTCCAGCTGGTCAGAGACCCGAAACTGCTCCACCTCCTGAATCAAATCATTTTCCTCAGCATGGCTTTGGTTTCATGGGTGGGCTGGCAGGGTTTGCCCCAACGGCAACTGCAAGATTTGGGAATTTTACTTTGTCCACAGCATTTGGTGGtttctttccttcctttttcaaCTTTCAAATGCATCCTGGGTTTCATGATGGAGCCATGTATGGTAATCCGGCTGGTTTTCATTATGGATTTTCTAATCCATTTCATGGTGGCCATGCCCATGGATTTTATCCTCAGCACCCGGGTCAAGGACAACAAGATTACTATCTGAGAAGGCTACTTATGCTTGTTGTTTTCTGTGTTCTTCTTGCTTTCATTTGGCAATAG | 696 | 0.4353 | MASGFGESTSRSPPSPSCSSNNNNSDAGNFECNICFDLAQDPIITLCGHLFCWPCLYKWLHLHSQSRECPVCKALIEEDKLVPLYGRGKTSTDPRSRSIPGINIPHRPAGQRPETAPPPESNHFPQHGFGFMGGLAGFAPTATARFGNFTLSTAFGGFFPSFFNFQMHPGFHDGAMYGNPAGFHYGFSNPFHGGHAHGFYPQHPGQGQQDYYLRRLLMLVVFCVLLAFIWQ | 231 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sto5g0268 | 231 | SUPERFAMILY | RING/U-box | 29 | 85 | - | - | |
Sto5g0268 | 231 | PANTHER | OS12G0636000 PROTEIN | 2 | 231 | - | - | |
Sto5g0268 | 231 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Sto5g0268 | 231 | CDD | RING-HC_AtRMA_like | 30 | 74 | - | - | |
Sto5g0268 | 231 | ProSitePatterns | Zinc finger RING-type signature. | 47 | 56 | IPR017907 | - | |
Sto5g0268 | 231 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 2 | 231 | IPR045103 | GO:0005783|GO:0006511|GO:0061630 | |
Sto5g0268 | 231 | Pfam | Zinc finger, C3HC4 type (RING finger) | 30 | 77 | - | - | |
Sto5g0268 | 231 | ProSiteProfiles | Zinc finger RING-type profile. | 32 | 73 | IPR001841 | - | |
Sto5g0268 | 231 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 15 | 86 | IPR013083 | - | |
Sto5g0268 | 231 | SMART | ring_2 | 32 | 72 | IPR001841 | - | |
Sto5g0268 | 231 | MobiDBLite | consensus disorder prediction | 86 | 122 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Sto5g0268 | Sto-Chr5 | 1590638 | 1591333 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Sto5g0268 | 16 | 214 | C3H Transcription Factor Family | AT1G19310 | 66.019 | 3.00e-87 | 256 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sto5g0268 | K10666 | - | gmx:100527488 | 370.548 |