Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0200 ATGGGTTTCACGGAAGAAGCAGCATTATCACCCCACCACAATTCTCTCTGCGGTAATAATGACTTGAAGAATGAAATAATGGTGGAAGAAGGAGGAGGTGCGTGCAGATCAAGAGATTCAAGCAGGGATAGTGGAGAAGTGAGAGGCAGAGGGTATGAATGGGCAAGTGATGATGCAGAAAGCTGCTTGAGCACTAGTACTCACTCCACCCACCACTTTTCCAATCAACACATCTTCTATAATACACTTGCTTTCCCCACTAGATTTGCACACACTACTTCTTCTACTGAATTAGATCACCAGGATGATGATTTCAAATTAGGCGTTGAACTCAACACCCAGGCTCAGGCCCAGGCCCAGGCCCAGCTATCTTCCGCACACTTGTACTCCCCTACTACTGCTGCTTTTGGAGCACCCAAATTTACCCATATTCACCCCACTATTAACATCTCTAACTTAAATCATTCCCCCAATATCAATATGCACTCCACCCTTTCCTCATATATGATTATGCACGATAATACCTCCTCCATTCATTCTCCCACTAACTTGGGCAATGGCGTAGTAGAAACAAAGAGACCCAGCGCTGTAATGGAGTCAAAGCCTTCTCAATCTCAGACTCAGACGGCCTCAAAGAAAATACGACCCCAATCACGCTCATCATGTCCCCCCTTGAAGGTCAGGAAAGAGAAACTTGGAGACAGGATTGCGGCTCTTCAACAGCTGGTGGCTCCTTTCGGCAAGACAGACACAGCATCCGTACTAATGGAGGCTATTGGATACATCAAATTCCTCCAAAACCAAGTCGAGACGCTTAGTGTCCCATACATGAAGTCATCTCGGAACAGAGTGATGCAAGCGgGTTCAGGCAAAGACAGGCCAGGGGAGAGAGCGAAGCGAGATCTTAGAAGTGGAGGCCTTTGTGTGGTTCCATTGTCCTGCATGTCCTACATTACGGGTGATCATGCCGCTCCTGCAGTGTGGAACCAGTAA 993 0.4723 MGFTEEAALSPHHNSLCGNNDLKNEIMVEEGGGACRSRDSSRDSGEVRGRGYEWASDDAESCLSTSTHSTHHFSNQHIFYNTLAFPTRFAHTTSSTELDHQDDDFKLGVELNTQAQAQAQAQLSSAHLYSPTTAAFGAPKFTHIHPTINISNLNHSPNINMHSTLSSYMIMHDNTSSIHSPTNLGNGVVETKRPSAVMESKPSQSQTQTASKKIRPQSRSSCPPLKVRKEKLGDRIAALQQLVAPFGKTDTASVLMEAIGYIKFLQNQVETLSVPYMKSSRNRVMQAGSGKDRPGERAKRDLRSGGLCVVPLSCMSYITGDHAAPAVWNQ 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0200 330 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 216 265 IPR011598 GO:0046983
Sto5g0200 330 MobiDBLite consensus disorder prediction 197 218 - -
Sto5g0200 330 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 226 278 IPR036638 GO:0046983
Sto5g0200 330 MobiDBLite consensus disorder prediction 1 20 - -
Sto5g0200 330 CDD bHLH_AtbHLH_like 226 273 IPR045239 -
Sto5g0200 330 Gene3D - 226 286 IPR036638 GO:0046983
Sto5g0200 330 PANTHER OS01G0105700 PROTEIN 180 321 - -
Sto5g0200 330 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 180 321 - -
Sto5g0200 330 MobiDBLite consensus disorder prediction 192 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0200 Sto-Chr5 1196383 1198624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0200 190 317 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27660 67.176 1.38e-49 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0200 - - mtr:MTR_3g112170 209.149
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0200 5 1196383 1198624 Sto5g0200 5 1196383 1198624 ECH