Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0172 ATGGTAGAGCAGAGTGGATATCCCAATTTGACTGTCCCTCACATCTCCAAAACCCATAATATAGAATCAGAGCATCTCTGGATCTCTAAGCTCATGAAGATCCAGTGCGACGTCTGTAACAATCACGAGGCCTCCCTCTTCTGCACCGCCGACGAGGCCGCCCTATGCGACGCCTGCGACCACCGTGTCCACCATGCCAACAAGCTCGCTTCCAAGCACCACCGCTTTTCTCTTCACCGCCCTTGCTCCAACCAATCCACTCTCTGCGATGTTTGCCTGGAGAGAAGAGCTTTCATGTTCTGTCAGCAGGACAGAGCAATTCTGTGCAGCGATTGTGACATGGCGATTCATTCAGCTAACGAGCACACCCAGAAGCATGATAGATTCCTGCTCTCTGGGATTAAGCTTTCTTCTGCTGCTAAGCTTTATTCATCATCAACTTGCAATCTCCCTGCTTCCGATTCTCTCTCCAATCTCAACTCTGTTTCTTCCTCTATAATTACCAAGACTTCACCTTCAACTATTAACAAGGCTGTCCCAACCAACCAAGCTTCTGTTTCCACCAGTAGCATATCTGAGTATCTCATGGAGACTCTCCCAGGCTGGCAGCTGGACGACTTTCTCGATTCCTCCTCTCTTCCCTTTGCTTTTTCCAAGGGTGATGATATGCTGGGTTTGCTTGATGCTGATGTTATTGAAGGCAACATGGGAAGTTTGTCGCCAGAGAGTATGGGCATCTGGGTTCCTCAAGCACCTGCACCCTCTCCTCTATATACTGCACAACAAGTAATTAGGTTTcaagaaagagaaacaaaacaaGTCACTAACATTGAAGCCCTCAGATCAAGGTCCACCAGGGATGATAATTACTTAGTTCCACAGATTAGCCCTCCCTCTAATGCCTCCAAGAGACCCAGACTTCTCTGCTAG 930 0.4742 MVEQSGYPNLTVPHISKTHNIESEHLWISKLMKIQCDVCNNHEASLFCTADEAALCDACDHRVHHANKLASKHHRFSLHRPCSNQSTLCDVCLERRAFMFCQQDRAILCSDCDMAIHSANEHTQKHDRFLLSGIKLSSAAKLYSSSTCNLPASDSLSNLNSVSSSIITKTSPSTINKAVPTNQASVSTSSISEYLMETLPGWQLDDFLDSSSLPFAFSKGDDMLGLLDADVIEGNMGSLSPESMGIWVPQAPAPSPLYTAQQVIRFQERETKQVTNIEALRSRSTRDDNYLVPQISPPSNASKRPRLLC 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0172 309 Pfam B-box zinc finger 35 73 IPR000315 GO:0008270
Sto5g0172 309 Pfam B-box zinc finger 84 123 IPR000315 GO:0008270
Sto5g0172 309 ProSiteProfiles Zinc finger B-box type profile. 84 131 IPR000315 GO:0008270
Sto5g0172 309 PANTHER B-BOX ZINC FINGER PROTEIN 19 32 306 - -
Sto5g0172 309 SMART bboxneu5 84 131 IPR000315 GO:0008270
Sto5g0172 309 SMART bboxneu5 31 78 IPR000315 GO:0008270
Sto5g0172 309 ProSiteProfiles Zinc finger B-box type profile. 31 78 IPR000315 GO:0008270
Sto5g0172 309 CDD Bbox1_BBX-like 36 78 - -
Sto5g0172 309 CDD Bbox1_BBX-like 88 131 - -
Sto5g0172 309 Gene3D Classic Zinc Finger 32 129 - -
Sto5g0172 309 MobiDBLite consensus disorder prediction 288 309 - -
Sto5g0172 309 PANTHER B-BOX ZINC FINGER PROTEIN 22 32 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0172 Sto-Chr5 1006727 1007982 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0172 32 304 C2C2-CO-like Transcription Factor Family AT1G75540 42.462 1.58e-74 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Sto5g0172 zf-B_box 1.7e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0172 - - gmx:100790972 308.145
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0172 5 1006727 1007982 Sto2g0813 2 7031799 7033824 ECH
Sto5g0172 5 1006727 1007982 Sto5g0172 5 1006727 1007982 ECH