Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0102 ATGACTCAAGATGTGGAAATGAAAGATCATGCAACTCCATCGCATTCTGTTTCTTCAGCTGTTCCATCTACTTTACAGCATTTAAAGGAGATAGCATCACTTATAGAGACCGGTTCGTATTCAAAGGAAGTTCGTAGAATTGCTCGTGCTGTTCGCCTAACAATTGCATTGAGGCGTAAATTGACAGCATCTGTGCTCTCATCTTTTCTCGATTACGTCCTTACTCCAGGTTCTGAGGCTCACGCCAGATTGTCTGCTTATGTTCCTAAGGTATATGTGGATGATCAGGAGATGGAAGTGGATACTGCAACATCTGCTATTCAAACCCCATCTAAACACTTACTGCCTGAGCTAGATATCTACTGCTACTTGCTCACTCTACTTTTTCTTATTGATCAGAAAAGATACAATGAGGCCAAAGCTTGTGCATCAGCAAGCATTGCTCGGCTGAAGAACCTGAACAGAAGAACTGTTGATGTCATTGCTTCCAGACTATACTTTTATTACTCTTATAGCTACGAGCTTACTGGAGATCTTGCTGAAATCCGGGGCAACCTCCTTGCATTGCATCGTATTGCCACCCTCCGCCATGATGAGCTGGGCCAGGAAACCCTTCTTAATTTGTTACTTCGTAATTACCTCCACTACAACCTGTATGATCTGGCAGAGAAGTTAAGGTCTAAGGCACCACGATTTGAAGCACATTCTAATCAGCAGTTCTGCCGATATCTCTTCTACCTTGGAAAGATTCGTACAATACAGTTGGAGTATACCGATGCGAAAGAGTCACTACTGCAGGCTGCTCGGAAAGCACCAGTTGCAGCACGGGGCTTTCGAATTCAATGTAATAAGTGGGCAGTAATAGTGCGTTTGCTGTTGGGAGAAATACCTGAAAGGACTATCTTTATGCAGAGGGGAGCAGAAAAGGCTTTGAGGCCTTACTTTGAGCTTACAAATGCTGTGCGGATTGGTGACTTGGAGCTGTTTAGAAATGTTGCTGAAAAGTTTGCTACCACCTTCAGTACAGATGGAACTCATAATTTGATTGTTAGGCTGCGGCATAACGTCATCAGAACTGGTTTACGCAACATCAGCGTGTCTTATTCCCGCATCTCTTTAGCTGATGTAGCTCAAAAATTGAGGTTGAACTCTGCAAACCCTGTTGCAGATGCTGAGAGCATTGTAGCCAAGGCCATCCGTGATGGGGCAATCGATGCTACATTGGATCATGCTAATGGGTGGATGGTATCCAAGGAAACTGGAGATATTTACTCCACAAATGAGCCTCAATTGGCCTTTAATTCTCGGATTGCCTTCTGTCTTAACATGCACAATGAGGCCATACGTGCACTCCGTTTTCCACCAAACACACACAAGGAAAAGGAAAGCgctgagaagagaagagagaggcAACAGCAAGAACAAGAACTGGCTAAGCACATTGCAGAggaggatgatgatgatttttaa 1470 0.4272 MTQDVEMKDHATPSHSVSSAVPSTLQHLKEIASLIETGSYSKEVRRIARAVRLTIALRRKLTASVLSSFLDYVLTPGSEAHARLSAYVPKVYVDDQEMEVDTATSAIQTPSKHLLPELDIYCYLLTLLFLIDQKRYNEAKACASASIARLKNLNRRTVDVIASRLYFYYSYSYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDLAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAARGFRIQCNKWAVIVRLLLGEIPERTIFMQRGAEKALRPYFELTNAVRIGDLELFRNVAEKFATTFSTDGTHNLIVRLRHNVIRTGLRNISVSYSRISLADVAQKLRLNSANPVADAESIVAKAIRDGAIDATLDHANGWMVSKETGDIYSTNEPQLAFNSRIAFCLNMHNEAIRALRFPPNTHKEKESAEKRRERQQQEQELAKHIAEEDDDDF 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0102 489 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 1 489 - -
Sto5g0102 489 Pfam Proteasome regulatory subunit C-terminal 422 488 IPR013586 GO:0000502|GO:0030234|GO:0042176
Sto5g0102 489 SMART PINT_4 347 440 IPR000717 -
Sto5g0102 489 ProSiteProfiles PCI domain profile. 241 422 IPR000717 -
Sto5g0102 489 MobiDBLite consensus disorder prediction 453 482 - -
Sto5g0102 489 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 347 440 - -
Sto5g0102 489 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3 1 489 - -
Sto5g0102 489 Coils Coil 456 483 - -
Sto5g0102 489 MobiDBLite consensus disorder prediction 453 489 - -
Sto5g0102 489 Pfam PCI domain 313 418 IPR000717 -
Sto5g0102 489 MobiDBLite consensus disorder prediction 1 21 - -
Sto5g0102 489 Gene3D - 245 440 - -
Sto5g0102 489 SUPERFAMILY "Winged helix" DNA-binding domain 348 423 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0102 Sto-Chr5 613326 616013 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0102 K03033 - gmx:100814379 850.892
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0102 5 613326 616013 Sto9g3722 9 35492857 35493219 CCT
Sto5g0102 5 613326 616013 Sto5g0102 5 613326 616013 ECH