Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0081 ATGTCGCCGGTCGACGCAAACAAGCTATGGAGTGCGGAGGAGGTCAAGCATTACCCTGCCCCACTTGCTTCTCACGACGACGTCGTCAAGGACCCCACTGTTTTCTGGGACACTCTTAGGCGCTTTCACTTCGTTATGGGTACCAAGTTCATGATTCCTGTGATTGGAGGGAAGGAACTGGATTTGCACGTTCTTTACGTGGAGGTTACGAGGAGGAGTGGTTATGAGAAGGTGGTGGCAGAGAAGAAATGGAGGGAAGTGGGGAACGTGTTCAGATTCTCTCCCACTACAACAAGTGCTTCTTTTGTACTAAGGAAACATTACTTGAGTCTTCTTTACCATTACGAACAAGTTCACTTCTTTAAGGCTCGGGGTCCTCTCTTCACTCCATCTTCAGCTGCATTTTCTGTCAGCAACCAGTCTTGGAGACCTGAATTAGCTATTGTGGAATATTCACCCAACCGGATAAACGAGTGTCCTACTCCTCCATCCCATCATCATGAAGAGTGTTATAATAAAGTAAACGGAACGATAGAAGGAAAGTTCGATTGTGGATATTTGATATCTGTGAAAGTGGGATCGGAGGTTCTGAAAGGCGTGCTTTACCATCCACAGCAATCGGAAACAGATGGTGCATCAGTTTCCCAATGTAATAGTGGGAATGCGATTGTGCCATATAATGCCAAAAGTCGGCGTTTGGGTAGGAGGAGACGGAACAAAAGAAGGTGGGACCCCAACTATCCCAAACCAAACAGGAGTGGCTATAACTTCTTTTTTGCTGAGAAACATTACAAGCTCAAATCCCTTTATCCAAACAGAGAAAGAGAGTTTACCAAAATGATTGGTCAGTCATGGAGCAGTCTTAGCCCCGAGGAGAGAATGGTGTATCAGAACATTGGGTTGAGAGACAAGGAGAGATACAAGAGAGAATTGAGGGAGTACAAAGAGAAAATGAAGCATGGACATGGTAGTCAGACTCAAGCAGTGCAACTTGCGATATTGTGCGTAGCCAGTATTTGGTGCGTTGACAAGCGTGCAGTGGGTTACATGTTCCTGGGAAATCTTGTGAATTTGTTACATCTCACAGTTTGGATCCCTGTTGATCGTAAGATAGCGTCCCCTTCGCCTTCTCTGTATGTGGTAATCTTGTTATCGATGGTATGCTCTGTGTTAACGAGGAACAATAGCAAATTGGTGTCTTTGGGATTGCACATGATTGGTTTTAGATTGTGCGAGGAAATCAAACGTGAGGAATGTGAAAAGGCAGAAGGTGGTGTGAATGACCCGGTTGTAGCAGCTGAAGCATTGAAGGAAGCGGAAGGGCATCAGGATGATGAAAAGGAACTGCAAACATTGatattgaaattggaattggaattagaattgatgAAGAAAAAGGAACTACAAGCATGGGAATTGGTCAACAGAATGGAACTTGAAGCCAATTGA 1449 0.4403 MSPVDANKLWSAEEVKHYPAPLASHDDVVKDPTVFWDTLRRFHFVMGTKFMIPVIGGKELDLHVLYVEVTRRSGYEKVVAEKKWREVGNVFRFSPTTTSASFVLRKHYLSLLYHYEQVHFFKARGPLFTPSSAAFSVSNQSWRPELAIVEYSPNRINECPTPPSHHHEECYNKVNGTIEGKFDCGYLISVKVGSEVLKGVLYHPQQSETDGASVSQCNSGNAIVPYNAKSRRLGRRRRNKRRWDPNYPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGQSWSSLSPEERMVYQNIGLRDKERYKRELREYKEKMKHGHGSQTQAVQLAILCVASIWCVDKRAVGYMFLGNLVNLLHLTVWIPVDRKIASPSPSLYVVILLSMVCSVLTRNNSKLVSLGLHMIGFRLCEEIKREECEKAEGGVNDPVVAAEALKEAEGHQDDEKELQTLILKLELELELMKKKELQAWELVNRMELEAN 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0081 482 CDD ARID_HMGB9-like 31 116 IPR045303 GO:0003677
Sto5g0081 482 SUPERFAMILY ARID-like 25 127 IPR036431 GO:0003677
Sto5g0081 482 Pfam ARID/BRIGHT DNA binding domain 35 116 IPR001606 GO:0003677
Sto5g0081 482 MobiDBLite consensus disorder prediction 228 248 - -
Sto5g0081 482 ProSiteProfiles ARID domain profile. 29 120 IPR001606 GO:0003677
Sto5g0081 482 Gene3D - 20 125 IPR036431 GO:0003677
Sto5g0081 482 Coils Coil 446 466 - -
Sto5g0081 482 SUPERFAMILY HMG-box 245 318 IPR036910 -
Sto5g0081 482 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 11 326 - -
Sto5g0081 482 CDD HMGB-UBF_HMG-box 248 312 - -
Sto5g0081 482 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 11 326 - -
Sto5g0081 482 SMART hmgende2 247 316 IPR009071 -
Sto5g0081 482 Pfam HMG (high mobility group) box 248 315 IPR009071 -
Sto5g0081 482 SMART bright_3 30 121 IPR001606 GO:0003677
Sto5g0081 482 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 248 315 IPR009071 -
Sto5g0081 482 Gene3D High mobility group box domain 233 327 IPR036910 -
Sto5g0081 482 SMART ARID_2 26 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0081 Sto-Chr5 510680 514298 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0081 11 328 ARID Transcription Factor Family AT1G76110 66.044 1.62e-137 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Sto5g0081 ARID 4.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0081 - - gmx:100784746 462.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0081 5 510680 514298 Sto5g0081 5 510680 514298 ECH