Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0078 ctgcAGGCATTCAACTGGGAGTCTAGCAAGTGCGATTGGTGGagaaatttggaaggaaaagttCCAGACATAGCAAGGGCTGGATTTACTTCAGCATGGTTGCCACCAGCAACTCATTCGTTCTCTCCCGATGGTTACACTCCACAGAACCTTTATTCTCTCAACAGTTCATATGGTTCTGAGCATCAGTTAAAAGCTTTGCTTCAAAAGATGAAGCAATACCAGGTCAGAGCAATGGCTGACATAGTAATCAATCATCGTGTTGGCACTACACAGGGACGTGGAGGGATGTATAATCGTTATGATGGAATTCCATTATCATGGGATGAACGTGCTGTGACATCATGTACTGGTGGTCTGGGTAATCGAAGCACGGGAGATAATTTTGATGGGTTTCCAAATATTGATCATACCCAAGATTTTGTGAGAAAGGATATCGTTGGATGGCTCCGATGGCTACGTAATAATGTAGGCTTTCAAGATTTTCGTTTTGATTTTGCAAGAGGTTATTCACCAAAATTTGTGAGAGAATACATTGAAGGAGCAAAGCCAGTATTCTCTGTTGGGGAGTACTGGGATTCTTGCAGCTATCATGGTTCAAGTCTAGACTATAACCAAGATAGCCATAGGCAACGGATAATCAATTGGATTGATGGCACAGGTCAGCTTTCAACTGCATTTGACTTCACAACAAAAGGAATTCTCCAGGAAGCTGTCAAGGGAGATTTTTGGCGTCTCCGTGATTCTCAAGGAAAGCCACCAGGTGTGATGGGATGGTGGCCTTCAAGAGCAGTAACATTTCTAGATAATCACGATACAGGCTCAACACAGGCTCATTGGCCCTTTCCCTCAAATCATATCATGGAGGGATATGCGTACATATTGACTCATCCAGGGATACCATCAGTTTTCTATGATCACTTTTACGATTGGGGTAACTCCATTCATGAGCAGATTGTGAAATTGATTGACATCCGCAAACGTCAAGGTATTCACAGTCGATCATCTGTCAGGATTGCTGATGCTAAGCAAAATCTTTATTCTGCATTCATCGGGGACAAATTGTGCATGAAGATCGGGGATGCTTCCTGGTGCCCTTCTGGGAGGGAATGGACACTCGCAACTAGTGGCCACAGATATGCAGTATGGCACAAATAA 1158 0.4275 LQAFNWESSKCDWWRNLEGKVPDIARAGFTSAWLPPATHSFSPDGYTPQNLYSLNSSYGSEHQLKALLQKMKQYQVRAMADIVINHRVGTTQGRGGMYNRYDGIPLSWDERAVTSCTGGLGNRSTGDNFDGFPNIDHTQDFVRKDIVGWLRWLRNNVGFQDFRFDFARGYSPKFVREYIEGAKPVFSVGEYWDSCSYHGSSLDYNQDSHRQRIINWIDGTGQLSTAFDFTTKGILQEAVKGDFWRLRDSQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFPSNHIMEGYAYILTHPGIPSVFYDHFYDWGNSIHEQIVKLIDIRKRQGIHSRSSVRIADAKQNLYSAFIGDKLCMKIGDASWCPSGREWTLATSGHRYAVWHK 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0078 385 SMART aamy 1 326 IPR006047 GO:0005975
Sto5g0078 385 Gene3D - 331 385 IPR013780 -
Sto5g0078 385 SUPERFAMILY (Trans)glycosidases 12 316 IPR017853 -
Sto5g0078 385 PANTHER ALPHA-AMYLASE 1 385 - -
Sto5g0078 385 SMART alpha-amyl_c2 327 385 IPR012850 GO:0004556|GO:0005509|GO:0005975
Sto5g0078 385 CDD AmyAc_arch_bac_plant_AmyA 1 337 - -
Sto5g0078 385 PRINTS Alpha-amylase signature 75 86 IPR006046 GO:0004556|GO:0005975|GO:0043169
Sto5g0078 385 PRINTS Alpha-amylase signature 159 170 IPR006046 GO:0004556|GO:0005975|GO:0043169
Sto5g0078 385 PRINTS Alpha-amylase signature 262 274 IPR006046 GO:0004556|GO:0005975|GO:0043169
Sto5g0078 385 SUPERFAMILY Glycosyl hydrolase domain 331 385 - -
Sto5g0078 385 PIRSF Alpha-amylase_plant 1 385 IPR013775 GO:0004556|GO:0005509|GO:0005975
Sto5g0078 385 Pfam Alpha-amylase C-terminal beta-sheet domain 328 384 IPR012850 GO:0004556|GO:0005509|GO:0005975
Sto5g0078 385 Gene3D Glycosidases 1 330 - -
Sto5g0078 385 Pfam Alpha amylase, catalytic domain 24 87 IPR006047 GO:0005975
Sto5g0078 385 PANTHER ALPHA-AMYLASE 2-RELATED 1 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0078 Sto-Chr5 494365 496987 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0078 1 385 Glycoside Hydrolase AT1G76130 81.558 0.0 682
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0078 K01176 - cit:102625798 725.702
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0078 5 494365 496987 Sto5g0078 5 494365 496987 ECH