Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0061 ATGGAGCAAATGGACCCAAGAAGTGGCTTCTGCAACTCCAATTGTATCTTCTACAGTAAGCGGAAGCCTCTTCCACTGCCTCAAAATCACTCCCTTGATATCACCACCTTCATCTCCTCCCACGCCCATCACGGCAAGCTCGCTCTCATCGATGCTTCCACCGGTAGCCACTTCACCTTCACACAACTATGGCAAGCCGTCGATGCCGTCGCCACCTCTCTCTCCGCCATGGGTATTCGAAAGGGCCACGTCGTCCTCCTTCTCTCCCCCAACTCCATTTACTTTCCCATCGTCTGCCTTGCCGTCATGAACCTGGGAGCTATAATCACCACCACCAATCCTCTCAACACTTCCGCCGAAATCGCCAAGCAAATCTCCGATTCCAAACCTGTCCTCGCCTTTACGATTCCCCCTCTCCTTCCCAAAATCACCGCATCTTCAAACCTACCAATCGTCCTTATGGAAGAAGATGGGAAACCCCCAATTGCAGAAGCTAAAATTGTGAACACGCTAGGGGAGATGATGAAACATGAACCCGGTCCGAGCCGAGTCAGGGATCGAGTGTTCCAAGACGATACTGCCACTCTGCTGTACTCATCAGGTACGACGGGTGCAAGCAAAGGCGTGGTGTCTTCGCATCGGAATCTGATGGCAATGGTGAAGATCGTTTTGGGTCGATTCCCTATTGAAAGGGACGAGACCTTCATATGCACTGTTCCTATGTTCCACATATACGGTCTAGCGGCGTTCGCAACGGGAATTCTGGCATCAGGATCGACAATAGTGGTGCTATCTAAATTCGACATGGACGATATGCTTTCAGCCATCGAAAAGTACCGCGCGACGTACCTGCCGCTAGTGCCGCCCATATTGGTGGCGATGATGAACGGGGCGGATGCGATAAAGGCCAAGTACGACTTGAGTTCACTACACTCGGTGCTCTCGGGTGGGGCTCCGCTGAGCAAGGAGGTGATAGAGGGGTTCGTGGACAAGTATCCTAATGTCACAATTCTTCAGGGTTACGGATTAACGGAGTCCACTGGAATCGGAGCAACCACGGACTCTTTGGAGGAGAGTAGAAGGTACGGCACGGCCGGTCTCTTATCGCCCAGCACCGAGGCCAAAGTTGTGGACCCTGAAACTGGAGAAGCTTTGCCGGTTAATCGCACCGGTGAGCTCTGGCTCAGAGGGCCCACCATCATGAAAGGTTATTTCAGTAACGAGGAAGCAACCACATCGACCCTTAATTCAGAGGGGTGGTTGAGAACAGGGGATATTTGCTACATTGATAATGATGGATATATTTTCATTGTTGATAGGTTGAAAGAGCTTATTAAATACAAGGGATATCAGGTGCCGCCAGCAGAACTAGAGGCCTTGTTGCTAACTCATCCTAAAATTTCAGATGCGGCTGTGATACCATTCCCAGACAAGGAGGTTGGGCAATATCCAATGGCATACGTAGTAAGGAAGACTGCAACTAATATATCAGAAAAGGAAATTATGGATTTTGTGGCTGCACAGGTGGCTCCATATAAAAGAATTCGGAGGGTGGCATTCATATCTTCCATACCCAAAAACCCATCAGGCAAAATTCTTAGGAAGGATCTCATCAAGCTCGCCACATCTAAACTATAA 1638 0.4969 MEQMDPRSGFCNSNCIFYSKRKPLPLPQNHSLDITTFISSHAHHGKLALIDASTGSHFTFTQLWQAVDAVATSLSAMGIRKGHVVLLLSPNSIYFPIVCLAVMNLGAIITTTNPLNTSAEIAKQISDSKPVLAFTIPPLLPKITASSNLPIVLMEEDGKPPIAEAKIVNTLGEMMKHEPGPSRVRDRVFQDDTATLLYSSGTTGASKGVVSSHRNLMAMVKIVLGRFPIERDETFICTVPMFHIYGLAAFATGILASGSTIVVLSKFDMDDMLSAIEKYRATYLPLVPPILVAMMNGADAIKAKYDLSSLHSVLSGGAPLSKEVIEGFVDKYPNVTILQGYGLTESTGIGATTDSLEESRRYGTAGLLSPSTEAKVVDPETGEALPVNRTGELWLRGPTIMKGYFSNEEATTSTLNSEGWLRTGDICYIDNDGYIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVIPFPDKEVGQYPMAYVVRKTATNISEKEIMDFVAAQVAPYKRIRRVAFISSIPKNPSGKILRKDLIKLATSKL 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0061 545 CDD 4CL 26 537 - -
Sto5g0061 545 Pfam AMP-binding enzyme 42 447 IPR000873 -
Sto5g0061 545 Gene3D - 14 442 IPR042099 -
Sto5g0061 545 SUPERFAMILY Acetyl-CoA synthetase-like 41 543 - -
Sto5g0061 545 Pfam AMP-binding enzyme C-terminal domain 456 531 IPR025110 -
Sto5g0061 545 PANTHER BNAA06G14440D PROTEIN 6 544 - -
Sto5g0061 545 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 6 544 - -
Sto5g0061 545 Gene3D - 443 544 IPR045851 -
Sto5g0061 545 ProSitePatterns Putative AMP-binding domain signature. 196 207 IPR020845 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0061 Sto-Chr5 400156 402357 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0061 4 545 Monolignol Biosynthesis Gene Families AT1G20500 64.899 0.0 731
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0061 K10526 - tcc:18591666 870.152
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0061 5 400156 402357 Sto5g0061 5 400156 402357 ECH