Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0047 ATGGCGTTAgatggaggagaagaaggaggtGAAACACTGGAGGGAGGCAATGGCTTCGATGAGGCAATTCAGCGGGAGGAGTCGGAAGCGGTTGAAGAAATTCAGAGAGTGCTTGAATCGGTAGCTCAGTTTGGGGAATATCGGAGGGCACACAGGAAAGAATGTCACACTCTTGCGAGGCGTTTGAAAATCTTGTTGCCTATTGTCGAAGAAATTCGGGATCTCGGTCCAAATATTCCAAAGGAGGGCATAGCTTGGTTGAATGATTTGAAGGATGCTCTCCTTTTTTCGAAGAAATTGCTAAAATTGTGTAGCGAGGGGAGCAAAATTCAACTGGCACTCGAGACCGAAGCGGTTATGATCAATTTTCAAGCTGCCTATCAAAAATTAAGCCAAGCCTTCGATGCTTTGCCTAGTGAACAACTAGGAATATCAGATGAATTGAAAGAACAGCTTGAGCTAATATGCGTCCAACTCAGGCGGGCGAGGAGGCGAACGGATACACAAGATATAGAACTTGCAATGGACATGATTGTGGTATTCTCAAAAGACGCGGATAGGAATGTTGACAGCGCTATTATAGAAAGGCTTGCAATAAAGCTTGATCTTCATACCATGGAGGATCTTAACATAGAAACAGCAGCCGTAAGGAAACTTGTTAAAGAAAGAAATGGGAAAAATGCAGAGAGTACCCAGCAAATAATTGACCTTCTTAACAAATTCAGACAAGTTGCAGGCATGGAAGTAACCAATGTTCTTGATGAACCTGACTTACCCAGAACGCTTGAGAAGTGTGCATCTTTGGTCATCCCACATGAATTTCTCTGCCCAATAACCCTAGAAATAATGACAGATCCTGTTATTATCGCAAGCGGACAGACATATGAAAGGGAAAGCATAGAGAAGTGGTTCGAGTCCAATCGTAACACCTGCCCAAAGAGTAGACAACCTCTGCCTCACCTGTCTGTAGCACCAAACTATGCCCTAAAAAATCTGATTTTAGTGTGGTGTGAGAAAAACAACTATAAACTTCCCCAAAAAGAAACTTCTACAAATGAAGAGAGCTGTTTAACAGATCCCAAAGTGGAAATACCATCTTTGGTTGAGAACCTATCATCTGTTCATTTAGAAGTGCAGAGAAAGGCAGTGAAGAAGATTCGCATGATATCAAAGGAGAATTCTGAGAACAGGGTTTTGGTTGCAGAGCATAGAGGAATACTGCCATTGGTGCAGCTCCTGTCATATCCAGATTCAAAAATACAAGAGCATGCAGTGACAGCACTTTTGAATCTATCAATTGATGAGGGTAACAAGAAACTTATATCTAACGAAGGGGCAATTCCAGCTATTATAGAGGTATTGGATAGTGGAAGTATTGAGGCTAAAGAAAATGCAGCAGCAGCTCTATTTAGCTTGTCAATGCTGgatgaaaataaagaaattgtgGGTCTATCAAATGGCATTCCCCCCTTGGTAGAGTTATTGCGGAGTGGGACAATACGAGGGAAAAAAGATGCTCTTACAGCTCTCTTCAATTTATCTCTCAACCATGCAAATAAGAGTAGGGCCATTAGTGCAGGCATTGTGACGCCCTTGATTCAGTTGCTAAGGGACATAAACTTGGGCATGATTGATGAGGTCCTCTCCATCATATTACTTCTTGCATCTAATCCAGATGGACGGCAAGAGCTTGGACAGCTCTCTTTCATTGAAACTCTAGTTGAGTTCATCAAAGATGGAACCCCCAAGAACAAGGAATGTGCAGCATCTGTTCTTCTTGAGTTGGGTTCTAAAAATTCTAACTTGATACTGGCAGCACTTCAGTTTGGCGTGTATGACCATATAATTGAGATAAAACAAAGTGGAACGGATAGAGCAAAGAGGAAAGCAGATGCATTTTTACAGCTCATGGCCAAGAACGAGCATATTTAA 1932 0.4125 MALDGGEEGGETLEGGNGFDEAIQREESEAVEEIQRVLESVAQFGEYRRAHRKECHTLARRLKILLPIVEEIRDLGPNIPKEGIAWLNDLKDALLFSKKLLKLCSEGSKIQLALETEAVMINFQAAYQKLSQAFDALPSEQLGISDELKEQLELICVQLRRARRRTDTQDIELAMDMIVVFSKDADRNVDSAIIERLAIKLDLHTMEDLNIETAAVRKLVKERNGKNAESTQQIIDLLNKFRQVAGMEVTNVLDEPDLPRTLEKCASLVIPHEFLCPITLEIMTDPVIIASGQTYERESIEKWFESNRNTCPKSRQPLPHLSVAPNYALKNLILVWCEKNNYKLPQKETSTNEESCLTDPKVEIPSLVENLSSVHLEVQRKAVKKIRMISKENSENRVLVAEHRGILPLVQLLSYPDSKIQEHAVTALLNLSIDEGNKKLISNEGAIPAIIEVLDSGSIEAKENAAAALFSLSMLDENKEIVGLSNGIPPLVELLRSGTIRGKKDALTALFNLSLNHANKSRAISAGIVTPLIQLLRDINLGMIDEVLSIILLLASNPDGRQELGQLSFIETLVEFIKDGTPKNKECAASVLLELGSKNSNLILAALQFGVYDHIIEIKQSGTDRAKRKADAFLQLMAKNEHI 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0047 643 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 486 528 IPR000225 GO:0005515
Sto5g0047 643 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 15 22 640 - -
Sto5g0047 643 CDD RING-Ubox_PUB 274 316 IPR045210 -
Sto5g0047 643 SUPERFAMILY ARM repeat 364 640 IPR016024 -
Sto5g0047 643 PANTHER U BOX DOMAIN-CONTAINING 22 640 - -
Sto5g0047 643 SUPERFAMILY RING/U-box 270 345 - -
Sto5g0047 643 Gene3D - 26 140 IPR036537 GO:0007166
Sto5g0047 643 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 404 446 IPR000225 GO:0005515
Sto5g0047 643 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 270 343 IPR013083 -
Sto5g0047 643 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 445 487 IPR000225 GO:0005515
Sto5g0047 643 SMART Ubox_2 273 336 IPR003613 GO:0004842|GO:0016567
Sto5g0047 643 ProSiteProfiles U-box domain profile. 269 343 IPR003613 GO:0004842|GO:0016567
Sto5g0047 643 SMART arm_5 475 515 IPR000225 GO:0005515
Sto5g0047 643 SMART arm_5 516 556 IPR000225 GO:0005515
Sto5g0047 643 SMART arm_5 393 433 IPR000225 GO:0005515
Sto5g0047 643 SMART arm_5 434 474 IPR000225 GO:0005515
Sto5g0047 643 SMART arm_5 557 597 IPR000225 GO:0005515
Sto5g0047 643 Coils Coil 145 165 - -
Sto5g0047 643 Pfam U-box domain 270 340 IPR003613 GO:0004842|GO:0016567
Sto5g0047 643 Gene3D - 344 641 IPR011989 -
Sto5g0047 643 Pfam Armadillo/beta-catenin-like repeat 435 473 IPR000225 GO:0005515
Sto5g0047 643 Pfam Armadillo/beta-catenin-like repeat 476 514 IPR000225 GO:0005515
Sto5g0047 643 Pfam Armadillo/beta-catenin-like repeat 393 432 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0047 Sto-Chr5 302050 304872 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0047 31 643 U-box Gene Family AT5G42340 61.338 0.0 726
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0047 - - gmx:100777362 887.486