Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0044 ATGGCCGCTTCTTCCTATTTGATTCTCCTCAGCTTACCCACAGCAAAGATCTTATCGTGGGAACATGTAGCAGCACATATATCCATCATGGGAGTGGGAGATGGTATTACGACACCTGATGCCACGTTGGAAATTCCGCCCGAGTCCTCCATCACCATGGATTTCGACTATATGGACCAACTTTTCGCGGATGGTTGCTGGTTGGAAACCGCGATGACTACTGCATCGGATTCCCTGCTACTCAATTCTACTCCTCTCTTTGACTATCCATTTTCATGGCCTCCGGAAGCTGCTCTCGACATGAATCAGAATTCGGAAGAGGTAAGAAggtggtggattggacccacaCCCTCACCCTCTATGGGTAATCCAGGGCCTGCATCTAGTAGTGTAAGGGATAGATTAGTAAGAGCgcttatatatatgaaaggactgaagagagagaaagatgaaGCACATGCGCTGATACAGATATGGGTGCCAGTGAAGAGAGGGGGTCGGAGGATTCTGACCACAAGTGATGTGCCGTTCTGGCTGGAAACAAGGTGTCCAAATCTGGCAAAGTACCGAGAGATATCAGAGAAATATGAGTTTTCAGGAGAGGAGGGATTGCCTGGTCGAGTTTACGTGGGGAAGGTTCCAGAGTGGACTCCTGATGTTCGATTGTTCACAAGTGATGAGTATCCACGAGTAGAGCATGCTCAACACTGTGATGTACGTGGGAGCTTAGCACTTCCAATCTTTGAGCAGGGTAGCAGTAGCACCACTTCCACTTGCTTGGGTGTTATTGAGCTTGTCATGACTAACCACCAGATCAACTATACTTCCCAACTCCAAACTCTCTGCAAGGCCTTACAGGCTGTTGATCTTAGGAGCTGCAGTAGTATGCAGACAGTGAAGAAGGGATGCAACAAGTGGTATGAAGGAGCAATACCGGAGATTGCAGAGGTGTTGAGATGCGCATGTGAAACGCACCAACTGCCTTTGGCTCAGGCTTGGGTGCCATGCATCCAACAAGACAAAGAGGGTTGCCGCCACTCGGATGACAATTACTTACACTGCATATCTCCTGTGGAGCAGGCTTGCTATGTTGGGGATAAGCGTGTGCAGGGTTTTCACGAGGCTTGCTGTGAGCATCACTTGTTAAGAGGCCAAGGCATTGCAGGAGAGGCTTTTCTCACCAATCACCCATGCTTCTCACCTGATATCACTTCCTTGCCCAAGACGCAGTATCCACTCTCTCACCATGCCAGGATGTTTAATTTGAAGGCTGCTGTTGCTATCCGCCTCCGCAGTATCCATTGTGCTGTTGCTAATAAACATGACTTTGTCCTAGAGTTCTTCTTGCCCCACTGTGATCAACACAAGAACATGCTCGCTTCATTGTCCACCATCATACAAACCCTTTGCCGTAGCTTTCGGGTCATAACACACCAAGAACTGGAGCAGGAAACTAATTTGTTAGTTGGTGATAGTAGCCGTAGGCATCAACTAGAAGCCGACCAGCTGGAGTTTCCTGCTGGTGGAGAGAGTAGCTTATCAAGTGCAGGTATAAGCAAAGTGGGAGAGAGAAGACGGGCCAAATCAGACAAAACTATCACACTGCAAGATCTTCAACAACACTTTCCTGGGAGCCTTAAAGATGCTGCAAAGAATATTGGTGTGTGTACTACGACCTTGAAAAGGATATGCCGCCAACATGGCATAAAGCGTTGGCCTTCTCACTCATTCTACTCAAACTTCCCCAAATTAGCATCTCCAAATTTGTCAACTGGTATGCCGCAGAACCCATCAACCACACAGCCCGAATCGAAATCGCCCACAACTTCATGCAGTGAGAGTTCCATTTCGAGCCATTCGTGTTCCAGCGCATCGGAGCAACAGCCTCAGACAAGAAAGGTTGATGGTGCGTTGAAGAGGGTGAGAAGTGAAGCAGAGCTGAAATGGTTGAGTGAAGATAAAGCAAAGGTATTGCCCAGATCCCAAAGCCACAAAGCACTTGGTTTTGGAAATAACCTAAAAACGGCTCAAAAGGAGGATGGTATGGCTCACAGTCACAGTCACAGAGTGAAAATCACATACGGAGATGAGAAAGCTCGATTTCGGATGCCAAAGAATTGGGGATACACACATCTTTTGCAGGAAATTGCTAAGCGATTTAACATAAATGACATCACCAATTTCTATATCAAGTATCTGGATGATGACTCTGATTGGGTGTTACTAACCTGTGATGCTGATTTGGAGGAGTGTATTTATATTGCCCAATCTTCAGCGACCGCTACCATCAAACTTTCCCTCCATCACTCTATGAGAACAAGCCCTGCTCCTTCATAA 2337 0.4596 MAASSYLILLSLPTAKILSWEHVAAHISIMGVGDGITTPDATLEIPPESSITMDFDYMDQLFADGCWLETAMTTASDSLLLNSTPLFDYPFSWPPEAALDMNQNSEEVRRWWIGPTPSPSMGNPGPASSSVRDRLVRALIYMKGLKREKDEAHALIQIWVPVKRGGRRILTTSDVPFWLETRCPNLAKYREISEKYEFSGEEGLPGRVYVGKVPEWTPDVRLFTSDEYPRVEHAQHCDVRGSLALPIFEQGSSSTTSTCLGVIELVMTNHQINYTSQLQTLCKALQAVDLRSCSSMQTVKKGCNKWYEGAIPEIAEVLRCACETHQLPLAQAWVPCIQQDKEGCRHSDDNYLHCISPVEQACYVGDKRVQGFHEACCEHHLLRGQGIAGEAFLTNHPCFSPDITSLPKTQYPLSHHARMFNLKAAVAIRLRSIHCAVANKHDFVLEFFLPHCDQHKNMLASLSTIIQTLCRSFRVITHQELEQETNLLVGDSSRRHQLEADQLEFPAGGESSLSSAGISKVGERRRAKSDKTITLQDLQQHFPGSLKDAAKNIGVCTTTLKRICRQHGIKRWPSHSFYSNFPKLASPNLSTGMPQNPSTTQPESKSPTTSCSESSISSHSCSSASEQQPQTRKVDGALKRVRSEAELKWLSEDKAKVLPRSQSHKALGFGNNLKTAQKEDGMAHSHSHRVKITYGDEKARFRMPKNWGYTHLLQEIAKRFNINDITNFYIKYLDDDSDWVLLTCDADLEECIYIAQSSATATIKLSLHHSMRTSPAPS 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0044 778 PANTHER PROTEIN NLP8 101 498 IPR045012 GO:0003700
Sto5g0044 778 PANTHER PROTEIN NLP8 575 772 IPR045012 GO:0003700
Sto5g0044 778 PANTHER PROTEIN NLP8 513 575 IPR045012 GO:0003700
Sto5g0044 778 Gene3D - 683 768 - -
Sto5g0044 778 MobiDBLite consensus disorder prediction 503 532 - -
Sto5g0044 778 Pfam PB1 domain 688 769 IPR000270 GO:0005515
Sto5g0044 778 ProSiteProfiles RWP-RK domain profile. 517 602 IPR003035 -
Sto5g0044 778 CDD PB1_NLP 688 769 IPR034891 -
Sto5g0044 778 PANTHER PROTEIN NLP4 513 575 - -
Sto5g0044 778 PANTHER PROTEIN NLP4 101 498 - -
Sto5g0044 778 PANTHER PROTEIN NLP4 575 772 - -
Sto5g0044 778 ProSiteProfiles PB1 domain profile. 687 770 IPR000270 GO:0005515
Sto5g0044 778 SUPERFAMILY CAD & PB1 domains 682 771 - -
Sto5g0044 778 MobiDBLite consensus disorder prediction 586 632 - -
Sto5g0044 778 MobiDBLite consensus disorder prediction 586 637 - -
Sto5g0044 778 Pfam RWP-RK domain 532 576 IPR003035 -
Sto5g0044 778 SMART PB1_new 687 770 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0044 Sto-Chr5 290182 293270 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0044 50 778 NLP Transcription Factor Family AT1G20640 41.954 0.0 603
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Sto5g0044 PB1 7.5e-18 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0044 - - gmx:100790922 766.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0044 5 290182 293270 Sto5g0044 5 290182 293270 ECH