Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0038 ATGAAAGGAGCCAAATCCAAGTCCGAATCTAAGAAACCTAATGCCAAGCTTGCCGTTAATAAGAAAGGTAGCGCCGCCACCAAGGCAGGCGGGAGATCGAGTAAGGGCAAGGCAGCCAAAGACCCTAACAAGCCCAAGAGACCACCCAGTGCCTTCTTCGTCttcatGGAGGAATTTAGGAAGCAGTTCAACAAGGAACATCCTGAAAACAAGGCCGTATCTGCTGTTGGCAAAGCTGCTGGGGCCAAATGGAAATCCATGTCGGATGCTgAAAAGGCACCATACGCAGCAAAGGCAGAGAAACGGAAGGCTGAGTATGAGAAGAATATGAAGGCTTATAACAAGAGACAAGCTGAAGGCCCTGAAGCTGCAGATGAAGAGGAATCAGACAAGTCTATGTCCGAAGTGAATGATGAGGATGATGGAGATGAAGAGGGAAGCGGCGAGGAGGACGATGACGAGTAG 465 0.4903 MKGAKSKSESKKPNAKLAVNKKGSAATKAGGRSSKGKAAKDPNKPKRPPSAFFVFMEEFRKQFNKEHPENKAVSAVGKAAGAKWKSMSDAEKAPYAAKAEKRKAEYEKNMKAYNKRQAEGPEAADEEESDKSMSEVNDEDDGDEEGSGEEDDDE 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0038 154 PANTHER HIGH MOBILITY GROUP B PROTEIN 2-RELATED 1 153 - -
Sto5g0038 154 MobiDBLite consensus disorder prediction 1 16 - -
Sto5g0038 154 Coils Coil 96 116 - -
Sto5g0038 154 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 45 114 IPR009071 -
Sto5g0038 154 MobiDBLite consensus disorder prediction 123 154 - -
Sto5g0038 154 Gene3D High mobility group box domain 30 114 IPR036910 -
Sto5g0038 154 MobiDBLite consensus disorder prediction 1 51 - -
Sto5g0038 154 MobiDBLite consensus disorder prediction 94 122 - -
Sto5g0038 154 MobiDBLite consensus disorder prediction 65 154 - -
Sto5g0038 154 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 1 153 IPR031061 -
Sto5g0038 154 CDD HMGB-UBF_HMG-box 45 111 - -
Sto5g0038 154 Pfam HMG (high mobility group) box 45 114 IPR009071 -
Sto5g0038 154 SMART hmgende2 44 115 IPR009071 -
Sto5g0038 154 SUPERFAMILY HMG-box 34 120 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0038 Sto-Chr5 235990 237303 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Sto5g0038 HMG_box 6.5e-24 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0038 K25507 - gmx:547975 201.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0038 5 235990 237303 Sto5g0038 5 235990 237303 ECH