Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0033 ATGATGGCTTCAAGCTGGGATGGAAGCAATGACCCTGGCAGCCAGTCAGATGAGAGCTATCATTTTGACAGGCTGCACATTGAGCCTATTTATGATGCTTTTGTATGTCCTCTGACAAAGCAAGTTATGCGCGATCCCGTTACCTTAGACAATGGACAGACTTTTGAACGTGAAGCAATTGAAAAATGGTTCAAGGAATGCAAGGAGAGTGGACGGAAACTAGTTTGCCCTTTGACTCTGAAAGAACTAAAAAGCACAGAACTGAATCCTAGTATAGCTTTGCGCAACACCATTGAAGAGTGGACTGCGAGGAATGAAGCTGCACAGCTGGACATGGCACGCAGGTCATTGAATATGGGGAGTCCAGAAAATGAAACACTACAGGCTTTACATTATGTCCGACACATCTGCCTAAGAAGTAGATCTAATAAGCATATTGTCCGCAGCGCGGGACTAATACCTATGATTGTTGACATGTTGAAGAGCGGTAGCCGCAAGGTTCGTTGTAGAGCTTTGGAAACCCTTAGAATTGTGGTGGAGGAAGACGATGAGAATAAGGAGTTGTTGGCTGAAGGGGACACTGTGCGCACAATAGTAAAGTTCCTTTCTCATGAGCTCTCTAAAGAAAGGGAGGAAGCTGTCTCTTTGCTTTATGAGCTCTCAAAATCCGAGACTTTGTGTGAGAAGATAGGTTCAATTAATGGGGCTATTCTTATATTAGTTGGAATGACAAGCAGCAAATCAGAAGATATTTTGACTGTTGAGAAGGCTGATAAAACATTGGAGAATCTGGAAAAATGTGAGAATAATGTGCGACAGATGGCTGAAAATGGTAGACTGCAGCCTCTTCTGACACAACTTCTTGAAGGTCCACCAGAAACCAAACTTTCCATGGCTGGATACCTTGGTGAGCTGGTATTGAATAATGATGTAAAGGTCCTTGTTGCTAAAACTGTGGGTTCATCCCTGATCAATATAATGAAAAGTGGTAATATGCAGTCAAGAGAAGCTTCACTGAAAGCTCTTAATCAGATATCATCATGTGAGCCAAGCGCAAAGGTTTTGATAGAGGCTGGAATACTATCACCTCTTGTCAGTGACCTTTTTGCAGTGGGTCCTAATCAGCTTCCCATGCGACTAAAAGAGGTCTCTGCTACCATTCTTGCCAATGTTGTAAACTCAGGAGATGACTTTGATTCCATCCCATTTGGACCTGATCACCAAACTCTGGTGTCAGAGGACATTGTTCATAATCTACTCCATCTTATTAGCAACACTGGTCCAGCTATTGAATGCAAACTCCTCCAAGTTCTTGTTGGACTTACTGGTTCTCCAACTACCGTCCTGAGTGTTGTTACTGCTATCAAAAGCTCAGGTGCCACTATCAGTCTTGTTCAATTCATTGAGGCTCCACAGAAAGATTTGCGAGTAGCTTCTATAAAGCTCCTTCAGAATTTGTCTCCCCACATGGGTCAGGAACTAGCTGATGCATTACGTGGTTCAGTTGGACAGCTTGGTAGTCTAATTAAAGTCATATCAGAAAATACAGGAATCAGTGAAGAGCAGGCAGCAGCTGTTGGGCTTCTAGCTGATCTACCCGAGAGGGATTTGGGGCTCACAAGACAGATGTTAGATGAAGGTGCCTTTCAGCTGGTCCATTCTAGAGTGATTACCATCAGGCAGGGGGAGATCAGAGGCAGCCGCTTTGTGACACCATTTCTTGAAGGGCTTGTGAAGATTCTTGCTAGGATTACATATGTCTTAGCTGATGAGCCTGATGCCATTGCATTCTGCCGTGAGTACAGTCTTGCTGCATTGTTTATTGAACTGCTTCAGGCCAATGGACTTGATAATGTACAGATGGTTTCTGCTACTGCTTTGGAGAATCTATCGCAAGAAACAAAGAATTTAACAAAATTGCCCGAGGTTCCATCTCCTGGTTTTTGTGCCTCAATCTTTCCATGCCTAAGCAAACAGCCTGTCATAACAGGATTGTGTAGGCTCCATCAGGGGTTGTGTTCGTTAAAAGAATCATTTTGCCTTTTGGAAGGGCAGGCAGTGCCTAAATTAGTAGCTTTATTGGACCACACAAACGTGAACGTGGTTGAGGCAGCACTTGCAGCCTCGTGTACATTGTTAAATGATGAAGTTGATATTGAACAAGGGGTGATGGTGCTGTGTGATGCAGAGGGAATTAAGCCTATACTCGATGTGTTACTTGAGAAACGCACAGAAAATCTGAGGAGGAGGGCAGTTTGGGCAGTTGAGAGATTATTGCGAACTGATGATATAGCCTATGAAGTTTCTGGAGATCAAAATGTGGGTACTGCACTTGTTGACGCCTTCCAGCATGGTGACTATCGAACTCGGCAGATTGCAGAGCGTGCTCTCAAGCATGTGGATAAGATTCCCAACTTCTCAGGAATCTTTCCAAGCATGGGATAG 2445 0.4393 MMASSWDGSNDPGSQSDESYHFDRLHIEPIYDAFVCPLTKQVMRDPVTLDNGQTFEREAIEKWFKECKESGRKLVCPLTLKELKSTELNPSIALRNTIEEWTARNEAAQLDMARRSLNMGSPENETLQALHYVRHICLRSRSNKHIVRSAGLIPMIVDMLKSGSRKVRCRALETLRIVVEEDDENKELLAEGDTVRTIVKFLSHELSKEREEAVSLLYELSKSETLCEKIGSINGAILILVGMTSSKSEDILTVEKADKTLENLEKCENNVRQMAENGRLQPLLTQLLEGPPETKLSMAGYLGELVLNNDVKVLVAKTVGSSLINIMKSGNMQSREASLKALNQISSCEPSAKVLIEAGILSPLVSDLFAVGPNQLPMRLKEVSATILANVVNSGDDFDSIPFGPDHQTLVSEDIVHNLLHLISNTGPAIECKLLQVLVGLTGSPTTVLSVVTAIKSSGATISLVQFIEAPQKDLRVASIKLLQNLSPHMGQELADALRGSVGQLGSLIKVISENTGISEEQAAAVGLLADLPERDLGLTRQMLDEGAFQLVHSRVITIRQGEIRGSRFVTPFLEGLVKILARITYVLADEPDAIAFCREYSLAALFIELLQANGLDNVQMVSATALENLSQETKNLTKLPEVPSPGFCASIFPCLSKQPVITGLCRLHQGLCSLKESFCLLEGQAVPKLVALLDHTNVNVVEAALAASCTLLNDEVDIEQGVMVLCDAEGIKPILDVLLEKRTENLRRRAVWAVERLLRTDDIAYEVSGDQNVGTALVDAFQHGDYRTRQIAERALKHVDKIPNFSGIFPSMG 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0033 814 ProSiteProfiles U-box domain profile. 29 108 IPR003613 GO:0004842|GO:0016567
Sto5g0033 814 CDD RING-Ubox_PUB 34 79 IPR045210 -
Sto5g0033 814 Pfam U-box domain 32 106 IPR003613 GO:0004842|GO:0016567
Sto5g0033 814 Gene3D - 117 317 IPR011989 -
Sto5g0033 814 SUPERFAMILY ARM repeat 121 537 IPR016024 -
Sto5g0033 814 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 116 IPR013083 -
Sto5g0033 814 SMART arm_5 591 632 IPR000225 GO:0005515
Sto5g0033 814 SMART arm_5 348 393 IPR000225 GO:0005515
Sto5g0033 814 SMART arm_5 182 222 IPR000225 GO:0005515
Sto5g0033 814 SMART arm_5 718 760 IPR000225 GO:0005515
Sto5g0033 814 SMART arm_5 673 714 IPR000225 GO:0005515
Sto5g0033 814 SMART arm_5 140 180 IPR000225 GO:0005515
Sto5g0033 814 SMART arm_5 267 307 IPR000225 GO:0005515
Sto5g0033 814 Gene3D - 318 487 IPR011989 -
Sto5g0033 814 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 812 - -
Sto5g0033 814 Gene3D - 574 804 IPR011989 -
Sto5g0033 814 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 43 2 812 - -
Sto5g0033 814 Coils Coil 257 277 - -
Sto5g0033 814 SMART Ubox_2 33 101 IPR003613 GO:0004842|GO:0016567
Sto5g0033 814 SUPERFAMILY RING/U-box 24 111 - -
Sto5g0033 814 SUPERFAMILY ARM repeat 458 802 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0033 Sto-Chr5 209852 213122 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0033 3 814 U-box Gene Family AT1G76390 65.971 0.0 1045
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0033 - - gmx:100789746 1427.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0033 5 209852 213122 Sto5g0033 5 209852 213122 ECH