Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0022 ATGAGTTTCCATCGGAGATTCCTAGGCGAGCGAGCGTCTCCGTCGCCGGCCATCGATTCCGATTTACTGGTCATCCTGGCTGCTCTCCTGTGTGGTCTTATATGCGTTTTAGGGCTGGTGGCCGTGGCCCGTTGCGCTTGTCTCCGTCGGGCTCCGGCTCCGGCTGCGGCTGCTGGCGCCAACAAAGGCATAAAGAAAAAGGCTCTCCGCTCTCTTCCAAAGCTCACCATCACACCTGAATCAGCATCCACCTACTCCGATTGCGCGATCTGCCTCACTGACCTCATCGGCGGCGATGAAATCCGCTTACTACCTCAGTGCGCCCATGCCTTCCACGTCTCCTGCATCGATAAGTGGCTGGAATCACACTCCTCCTGTCCCTCCTGCCGTCAGATTCTGGTGTTCAGTCGATGCCGCAAGTGTGGTGGCTCCACCACGCCACCTCTATCCCACGACCCCAACACCTTTCTACCCTAG 477 0.5807 MSFHRRFLGERASPSPAIDSDLLVILAALLCGLICVLGLVAVARCACLRRAPAPAAAAGANKGIKKKALRSLPKLTITPESASTYSDCAICLTDLIGGDEIRLLPQCAHAFHVSCIDKWLESHSSCPSCRQILVFSRCRKCGGSTTPPLSHDPNTFLP 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0022 158 ProSiteProfiles Zinc finger RING-type profile. 88 130 IPR001841 -
Sto5g0022 158 SMART ring_2 88 129 IPR001841 -
Sto5g0022 158 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 12 146 - -
Sto5g0022 158 Pfam Ring finger domain 87 130 IPR001841 -
Sto5g0022 158 PANTHER RING-H2 FINGER PROTEIN ATL8 12 146 - -
Sto5g0022 158 SUPERFAMILY RING/U-box 69 136 - -
Sto5g0022 158 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 53 134 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0022 Sto-Chr5 166484 166960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0022 6 158 C3H Transcription Factor Family AT1G20823 53.125 9.75e-57 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0022 - - gmx:100794614 153.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0022 5 166484 166960 Sto5g0022 5 166484 166960 ECH