Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0021 ATGTCGGGATCCGAGACGGGATTGATGACGAGTAGCGAGCTCTTCAACATGGGGCTGCCGAAAAGTCCTGCACCATCACAACCGGTCTTACAGAACATTCACTTGGGCTATAGTGTTGATGGGCGCACAGCTGAGTTCAAGCAGCTTGCGCCTGCCTCCCCACTGACCTTTCTCTCGTCAGGCTCAAACGCTGTCTCCGGTACTGATGGTGGTGAAGCACCGGGATTCAACTTCAACACGGGTAGTGAACCACTGAAGAGGAAGAGAGGGAGGCCAAGGAAATATGGTCCAGACGGCTCCATGCCACTAGGTTCGGCGTTTAAACTTCCCATAATGGCCGTCAACCAGTGCAGTGAAGGATCTGCGTTACCCACATCCTTGAAAAAAGTCAGAGGCAGACCCACCGGTTCTAGCAAGAAGCAACATTTAGAGCTTCTAGGATCTGCTGGAGTTGGATTTACACCACATGTTATTACTGTGAAAGCTGGAGAGGGGCGATTTGAGATCCTATCACTTTCTGGCTCTTTTCTTTTATCTGAGAATAGAAATCAGCGGAGTAGAACTGGTGGATTAAGGGTGTCCCTGTCTGGACCAGATGGTCGGGTTTTAGGTGGTGGAGTGGCTGGACTTTTGACAGCTGCTTCCCCTGTTCAGGCTGTTGTAGAGAGCTTTATTGCAGATGGTGGCAAGGAATCAAAGTCAGCAAGCCAAATGGAAGTTTTATCTGCCTCACAAAATTTGCCCCCGGcTCGCCATCACGGAGTACTCATAGTGAATCGTCAGGTGGACCTGGGAGCCCACTTAACCAGAGTACAGGAGCCTGCAATAACAACAGTAATCTTCAAGGCATTTCATGATTTGGTTGTGTCAGTGGATCCAGAAAGTGATTACATAAGTGATGATTTTATTATAtggaaggaaaggaaaagagaaattaaagGTGCCTTCCTCCATGATGTAAGGATAGTCTTCCTCCTTGTGGATTCCGCCATTAGCAACTATAAACGAAAATGCATAGTCCATCAGACCCCCATTGCACCCATTGTTGAAGCTCCTGTCACAATCAATCAGTTGTTGCTCCGAAAGAGACGTTAA 1095 0.4703 MSGSETGLMTSSELFNMGLPKSPAPSQPVLQNIHLGYSVDGRTAEFKQLAPASPLTFLSSGSNAVSGTDGGEAPGFNFNTGSEPLKRKRGRPRKYGPDGSMPLGSAFKLPIMAVNQCSEGSALPTSLKKVRGRPTGSSKKQHLELLGSAGVGFTPHVITVKAGEGRFEILSLSGSFLLSENRNQRSRTGGLRVSLSGPDGRVLGGGVAGLLTAASPVQAVVESFIADGGKESKSASQMEVLSASQNLPPARHHGVLIVNRQVDLGAHLTRVQEPAITTVIFKAFHDLVVSVDPESDYISDDFIIWKERKREIKGAFLHDVRIVFLLVDSAISNYKRKCIVHQTPIAPIVEAPVTINQLLLRKRR 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0021 364 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 164 250 IPR039605 GO:0003680
Sto5g0021 364 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 12 164 IPR039605 GO:0003680
Sto5g0021 364 MobiDBLite consensus disorder prediction 1 25 - -
Sto5g0021 364 Pfam Plants and Prokaryotes Conserved (PCC) domain 146 224 IPR005175 -
Sto5g0021 364 ProSiteProfiles PPC domain profile profile. 107 246 IPR005175 -
Sto5g0021 364 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 10-LIKE ISOFORM X1 164 250 - -
Sto5g0021 364 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 10-LIKE ISOFORM X1 12 164 - -
Sto5g0021 364 MobiDBLite consensus disorder prediction 1 17 - -
Sto5g0021 364 MobiDBLite consensus disorder prediction 66 101 - -
Sto5g0021 364 Gene3D - 127 248 - -
Sto5g0021 364 SUPERFAMILY AF0104/ALDC/Ptd012-like 163 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0021 Sto-Chr5 155645 163501 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0021 1 233 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 46.735 1.35e-50 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0021 - - vvi:100263332 257.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0021 5 155645 163501 Sto5g0021 5 155645 163501 ECH