LGRPv2

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Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto5g0008	ATGGAAAAGGTTGCTACACAAGTCGCTACTCCCATTTTCATTCATCAATCACTTTCTAGTCGATTTTGTGAGTCACCTGCTATGGCAAAGAAGCGTGATCTGTCCTACGCAGCCTCCCCCAACTTTGTCCACCAACAGTTGCAAAACCCTAGCGACAACTGGAACCCAAAGGTCTGGGACTGGGACACCGTCAGATTCGTTGCCAAACCCTTGGACACGGACATGCTTCGTCTGGGGACTCCCACGACCACTGCAGAAGACCAACGCCTTCCAACTGTTACCAATTTCAACAAGAACTCCACCGTCGACGATGACGAGGAAGAAGAAAGTCTTCGATTGAATCTCGGCGGTTGCTTGGCCTTCAATACGGTGCAGGAGCCTATGTCACGCCCTAACAAAAGGCTACGTTCTCGCTCACCTGGTGGACCCTCTTATCCCATGTGTCAGGTCGACAACTGTAAGGAAGATCTCTCTAATGCCAAAGACTATCACCGCCGACATAAAGTTTGTGAGGTTCACAGCAAATCTTCTAAAGCCCTTGTTGCTAATCAAATGCAACGATTCTGCCAGCAGTGTAGCAGATTTCACCCTCTGTCAGAGTTTGATGAGGGAAAAAGAAGCTGTAGACGTAGACTTGCTGGGCATAACCGTCGAAGAAGAAAGACTCAACCAGAAGATGTTACCTCCCGGCTCCTTCCTGGAAACCAGGATACTGCAAATACAACATCTAGCAATTTGGATATTGTCGACTTGTTGACTACAATTGCTCGTGCACAAGGGAAATTTGTGGAAAGAAGTAAAATCTGTTCACAACTTCCACAGAGAGACCAGCTTGTTCAGATTCTTAATAGGATAAATTCATTACCTTTGCCGGCTGACCTTGCTGCGAAGTTGGCCAATGTTGGGAATTTTTGTGTAAACGTTCCCGGGCAAACTTCTTCAGACCATCATGACAAATTGAACCAGAACAAATCTTCCCCATCAACTATGGATTTTCTTGCTGTTCTTTCAGCTACCCTATCAGCATCTGCTCCTGATGCCATTGCTTTACTCTCTCAAAAATGCAGCCACAGTAGTGACAGTGAGAAATCTAGGACAAGTGGTGCTGACCAAACTACTGAGccaagtttacagacaagacaGCCACTAGAGTTCCCTTCAATTGGAGCAGAAAGAAGTAGTAGCAGCTACCAGTCTCCTGTTGAAGATTCAGATTGCCGAGTTCAAGAGACTCGAATCAATTTACCACTGCAGCTTTTTAACTCCTCTCCAGAAGATGAAAGCCTGCTAAAAATGCCATCTTCGCAAAAGTACCTCTCATCTGACAGTAGTAATCCTCTTGAAGAGAGGTCACCGTCTTCTTCTCCATCTTTGGTACAGAAGCAGGTAGCTTTGCAGAGTGTAATTGAAGGTTTCAAGTCGAACAACATTGCAATTGGAAGAGTAGTCAATACACACAAGGAAGCCGGCCAACGGCATGACTGCAATATTTCTCTTGATCTTTTTAGAGGGTCAAATAGTAAAGTCCAACCTAGTTCAATGCAAAGTGTTCCATTTCAAGCTGGCTACAGATCTTCAGGATCTGATTATTCACCTTCCAGTTTTAATTCAGATGCTCAGGATCGTACTGGTCGAATAATGTTTAAATTATTTGACAAGGATCCTAGTCATTTCCCAGGAACACTGCGAACTCAGatttACAATTGGCTTTCTAATAGCCCATCAGAGATGGAGAGTTACATAAGGCCTGGCTGTGTGATCCTATCAGTCTATGTTTCAATGTCTTCAGCTACCTGGGAGTGTCTTGAAGAAAATTTTCTTCAACATGTACATTCTTTAATTCAAAATTCCGATTCTAAGTTTTGGAGAAATGGGAGGTTTCTAGTTCATGCTGGAAGTCAGTTAGCATCACATAAAGATGGTAAGATTCGCATATGCAAAACATGGAGAACATGGAGGTCTCCAGAGTTGATTTCTATCTCTCCTTTGGCAATTGTTGGGGGACAAGAAACCTCAATTTCGTTGAAGGGTAGAAATCTGTCAACTCCTGGCACCAAGATTCATTGCACGAATATGAGTTGTTACACATCAGAGGAAGTTATAGGGTCTGTTTATTCTGGTATGACTTGTGATGAGATAAAATTGGGTGGATTTAAAGTTCACAATGCATCTCCCAGTGTTTTTGGTCGCTGTTTTATCGAGGTTGAGAATGGTTTCAAGGGTAACAGTTTTCCAGTGATAATAGCTGATGCAACCATTTGTAAGGAATTGCAATCACTTGAGTCTGAGTTAGATATGGAGGTAAAATTATGTGATGCCATTGCAGAAGAGCATGCTTATGAGTTTCCAAGGACTGGGTCAAGGGAGGAGGCTTTGCATTTTCTGAATGAGCTTGGCTGGCTATTTCAAAGGAAGAGGTCCTCATATGCACTTGAGGTTCCAGATTATTCACTTGAGAGATTCAAGTTCTTACTCACTTTCTCTGTCGAAAGAAACTGTTTAATGTTGGTCAAAACCCTTATGGATATGCTGGTTGAGGAACATCTGGAAGGGGAATGGTTGTCCAAGGGATCAGAGGAGATGCTGAATGCAATTCAACTCTTAAACCGGGCAGTGAAAAGAAGGTTTATAGAAATGGTTGACTTGCTTGTCCACTATTCTATACCTAGCAAAAATGACGCTtccaagaaatatatatttccaCCGAGTGTGGAGGGACCTGCTGGTATTACACCCTTACATTTGGCTGCTTGCACATCAGGTTCTGAGGGTCTAATTGACTCTTTAACAAATGATCCGCAAGAGATTGGATTGAAGTGCTGGGAGTCCCTTGTGGATGCAAATGGGCAGACTCCGTATACCTATGCCACGATGAGAAATAATCATTCTTATAACATGCTGATTGCTCGTAAACTTGCTGACAGAGAAAAAGATCAAGTTTCAGTAACAATTGAAAACGAGATAGAGCAACCATCACTGAGAATTGAGCTTAAACCAAGGTCAAGAAACGAAGTTGGACAAGGTCACAGATCTTGTGCTAAGTGTGTGGTTGCAGCGATGCACTACAACAGAAGAGTTCTGGGTCCACATCGACTGCTTAACCGTCCCTATATTCATTCAGTGCTTGCTATTGCTGCTGTCTGTGTATGTGTTTGTCTATTCTTCCGTGGAGCCCCTGAAATAGGTTCAGTTGCTCCTTTCAAATCTGGCGATATTTTGGAGGAGGACCTCCCCCATGCCCTCGCCAAGACCCTCAATGAAGCCTCCGAGGAAGTCAATGACGACTTGGGAAGCGAGGCGGGCAGCTGTTCCCAGCATACTGGGCTTGACGGGGCCCTTGATACCATTGGCTTGGAGGCCGTTAACCATGTTCTTGGCACACACCGCATGGAGATGGTAGTCGCAGAGGGTGCAGTGGTAGACACGCCCCGATCTTCTCTTCTTGCACTCCCCACACGCAGAATCGCtgttggaggaggaggaggctaCCAGTTTTAG	3498	0.4365	MEKVATQVATPIFIHQSLSSRFCESPAMAKKRDLSYAASPNFVHQQLQNPSDNWNPKVWDWDTVRFVAKPLDTDMLRLGTPTTTAEDQRLPTVTNFNKNSTVDDDEEEESLRLNLGGCLAFNTVQEPMSRPNKRLRSRSPGGPSYPMCQVDNCKEDLSNAKDYHRRHKVCEVHSKSSKALVANQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQPEDVTSRLLPGNQDTANTTSSNLDIVDLLTTIARAQGKFVERSKICSQLPQRDQLVQILNRINSLPLPADLAAKLANVGNFCVNVPGQTSSDHHDKLNQNKSSPSTMDFLAVLSATLSASAPDAIALLSQKCSHSSDSEKSRTSGADQTTEPSLQTRQPLEFPSIGAERSSSSYQSPVEDSDCRVQETRINLPLQLFNSSPEDESLLKMPSSQKYLSSDSSNPLEERSPSSSPSLVQKQVALQSVIEGFKSNNIAIGRVVNTHKEAGQRHDCNISLDLFRGSNSKVQPSSMQSVPFQAGYRSSGSDYSPSSFNSDAQDRTGRIMFKLFDKDPSHFPGTLRTQIYNWLSNSPSEMESYIRPGCVILSVYVSMSSATWECLEENFLQHVHSLIQNSDSKFWRNGRFLVHAGSQLASHKDGKIRICKTWRTWRSPELISISPLAIVGGQETSISLKGRNLSTPGTKIHCTNMSCYTSEEVIGSVYSGMTCDEIKLGGFKVHNASPSVFGRCFIEVENGFKGNSFPVIIADATICKELQSLESELDMEVKLCDAIAEEHAYEFPRTGSREEALHFLNELGWLFQRKRSSYALEVPDYSLERFKFLLTFSVERNCLMLVKTLMDMLVEEHLEGEWLSKGSEEMLNAIQLLNRAVKRRFIEMVDLLVHYSIPSKNDASKKYIFPPSVEGPAGITPLHLAACTSGSEGLIDSLTNDPQEIGLKCWESLVDANGQTPYTYATMRNNHSYNMLIARKLADREKDQVSVTIENEIEQPSLRIELKPRSRNEVGQGHRSCAKCVVAAMHYNRRVLGPHRLLNRPYIHSVLAIAAVCVCVCLFFRGAPEIGSVAPFKSGDILEEDLPHALAKTLNEASEEVNDDLGSEAGSCSQHTGLDGALDTIGLEAVNHVLGTHRMEMVVAEGAVVDTPRSSLLALPTRRIAVGGGGGYQF	1165

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto5g0008	1165	MobiDBLite	consensus disorder prediction	128	147	-	-
	Sto5g0008	1165	SUPERFAMILY	Ankyrin repeat	828	970	IPR036770	-
	Sto5g0008	1165	SUPERFAMILY	SBT domain	146	226	IPR036893	GO:0003677\|GO:0005634
	Sto5g0008	1165	Gene3D	-	831	991	IPR036770	-
	Sto5g0008	1165	MobiDBLite	consensus disorder prediction	355	406	-	-
	Sto5g0008	1165	MobiDBLite	consensus disorder prediction	365	404	-	-
	Sto5g0008	1165	Pfam	SBP domain	148	221	IPR004333	GO:0003677
	Sto5g0008	1165	PANTHER	SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 14	40	1069	-	-
	Sto5g0008	1165	MobiDBLite	consensus disorder prediction	418	458	-	-
	Sto5g0008	1165	Gene3D	-	139	209	IPR036893	GO:0003677\|GO:0005634

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto5g0008	Sto-Chr5	86845	93970	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sto5g0008	1	1072	SBP-box Gene Family	AT1G20980	53.327	0.0	1025

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	SBP	Sto5g0008		SBP	1.2e-29	No_clan

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto5g0008	-		-	vvi:100240978	1346.26

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Sto5g0008	5	86845	93970	Sto5g0008	5	86845	93970	ECH

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