Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0008 ATGGAAAAGGTTGCTACACAAGTCGCTACTCCCATTTTCATTCATCAATCACTTTCTAGTCGATTTTGTGAGTCACCTGCTATGGCAAAGAAGCGTGATCTGTCCTACGCAGCCTCCCCCAACTTTGTCCACCAACAGTTGCAAAACCCTAGCGACAACTGGAACCCAAAGGTCTGGGACTGGGACACCGTCAGATTCGTTGCCAAACCCTTGGACACGGACATGCTTCGTCTGGGGACTCCCACGACCACTGCAGAAGACCAACGCCTTCCAACTGTTACCAATTTCAACAAGAACTCCACCGTCGACGATGACGAGGAAGAAGAAAGTCTTCGATTGAATCTCGGCGGTTGCTTGGCCTTCAATACGGTGCAGGAGCCTATGTCACGCCCTAACAAAAGGCTACGTTCTCGCTCACCTGGTGGACCCTCTTATCCCATGTGTCAGGTCGACAACTGTAAGGAAGATCTCTCTAATGCCAAAGACTATCACCGCCGACATAAAGTTTGTGAGGTTCACAGCAAATCTTCTAAAGCCCTTGTTGCTAATCAAATGCAACGATTCTGCCAGCAGTGTAGCAGATTTCACCCTCTGTCAGAGTTTGATGAGGGAAAAAGAAGCTGTAGACGTAGACTTGCTGGGCATAACCGTCGAAGAAGAAAGACTCAACCAGAAGATGTTACCTCCCGGCTCCTTCCTGGAAACCAGGATACTGCAAATACAACATCTAGCAATTTGGATATTGTCGACTTGTTGACTACAATTGCTCGTGCACAAGGGAAATTTGTGGAAAGAAGTAAAATCTGTTCACAACTTCCACAGAGAGACCAGCTTGTTCAGATTCTTAATAGGATAAATTCATTACCTTTGCCGGCTGACCTTGCTGCGAAGTTGGCCAATGTTGGGAATTTTTGTGTAAACGTTCCCGGGCAAACTTCTTCAGACCATCATGACAAATTGAACCAGAACAAATCTTCCCCATCAACTATGGATTTTCTTGCTGTTCTTTCAGCTACCCTATCAGCATCTGCTCCTGATGCCATTGCTTTACTCTCTCAAAAATGCAGCCACAGTAGTGACAGTGAGAAATCTAGGACAAGTGGTGCTGACCAAACTACTGAGccaagtttacagacaagacaGCCACTAGAGTTCCCTTCAATTGGAGCAGAAAGAAGTAGTAGCAGCTACCAGTCTCCTGTTGAAGATTCAGATTGCCGAGTTCAAGAGACTCGAATCAATTTACCACTGCAGCTTTTTAACTCCTCTCCAGAAGATGAAAGCCTGCTAAAAATGCCATCTTCGCAAAAGTACCTCTCATCTGACAGTAGTAATCCTCTTGAAGAGAGGTCACCGTCTTCTTCTCCATCTTTGGTACAGAAGCAGGTAGCTTTGCAGAGTGTAATTGAAGGTTTCAAGTCGAACAACATTGCAATTGGAAGAGTAGTCAATACACACAAGGAAGCCGGCCAACGGCATGACTGCAATATTTCTCTTGATCTTTTTAGAGGGTCAAATAGTAAAGTCCAACCTAGTTCAATGCAAAGTGTTCCATTTCAAGCTGGCTACAGATCTTCAGGATCTGATTATTCACCTTCCAGTTTTAATTCAGATGCTCAGGATCGTACTGGTCGAATAATGTTTAAATTATTTGACAAGGATCCTAGTCATTTCCCAGGAACACTGCGAACTCAGatttACAATTGGCTTTCTAATAGCCCATCAGAGATGGAGAGTTACATAAGGCCTGGCTGTGTGATCCTATCAGTCTATGTTTCAATGTCTTCAGCTACCTGGGAGTGTCTTGAAGAAAATTTTCTTCAACATGTACATTCTTTAATTCAAAATTCCGATTCTAAGTTTTGGAGAAATGGGAGGTTTCTAGTTCATGCTGGAAGTCAGTTAGCATCACATAAAGATGGTAAGATTCGCATATGCAAAACATGGAGAACATGGAGGTCTCCAGAGTTGATTTCTATCTCTCCTTTGGCAATTGTTGGGGGACAAGAAACCTCAATTTCGTTGAAGGGTAGAAATCTGTCAACTCCTGGCACCAAGATTCATTGCACGAATATGAGTTGTTACACATCAGAGGAAGTTATAGGGTCTGTTTATTCTGGTATGACTTGTGATGAGATAAAATTGGGTGGATTTAAAGTTCACAATGCATCTCCCAGTGTTTTTGGTCGCTGTTTTATCGAGGTTGAGAATGGTTTCAAGGGTAACAGTTTTCCAGTGATAATAGCTGATGCAACCATTTGTAAGGAATTGCAATCACTTGAGTCTGAGTTAGATATGGAGGTAAAATTATGTGATGCCATTGCAGAAGAGCATGCTTATGAGTTTCCAAGGACTGGGTCAAGGGAGGAGGCTTTGCATTTTCTGAATGAGCTTGGCTGGCTATTTCAAAGGAAGAGGTCCTCATATGCACTTGAGGTTCCAGATTATTCACTTGAGAGATTCAAGTTCTTACTCACTTTCTCTGTCGAAAGAAACTGTTTAATGTTGGTCAAAACCCTTATGGATATGCTGGTTGAGGAACATCTGGAAGGGGAATGGTTGTCCAAGGGATCAGAGGAGATGCTGAATGCAATTCAACTCTTAAACCGGGCAGTGAAAAGAAGGTTTATAGAAATGGTTGACTTGCTTGTCCACTATTCTATACCTAGCAAAAATGACGCTtccaagaaatatatatttccaCCGAGTGTGGAGGGACCTGCTGGTATTACACCCTTACATTTGGCTGCTTGCACATCAGGTTCTGAGGGTCTAATTGACTCTTTAACAAATGATCCGCAAGAGATTGGATTGAAGTGCTGGGAGTCCCTTGTGGATGCAAATGGGCAGACTCCGTATACCTATGCCACGATGAGAAATAATCATTCTTATAACATGCTGATTGCTCGTAAACTTGCTGACAGAGAAAAAGATCAAGTTTCAGTAACAATTGAAAACGAGATAGAGCAACCATCACTGAGAATTGAGCTTAAACCAAGGTCAAGAAACGAAGTTGGACAAGGTCACAGATCTTGTGCTAAGTGTGTGGTTGCAGCGATGCACTACAACAGAAGAGTTCTGGGTCCACATCGACTGCTTAACCGTCCCTATATTCATTCAGTGCTTGCTATTGCTGCTGTCTGTGTATGTGTTTGTCTATTCTTCCGTGGAGCCCCTGAAATAGGTTCAGTTGCTCCTTTCAAATCTGGCGATATTTTGGAGGAGGACCTCCCCCATGCCCTCGCCAAGACCCTCAATGAAGCCTCCGAGGAAGTCAATGACGACTTGGGAAGCGAGGCGGGCAGCTGTTCCCAGCATACTGGGCTTGACGGGGCCCTTGATACCATTGGCTTGGAGGCCGTTAACCATGTTCTTGGCACACACCGCATGGAGATGGTAGTCGCAGAGGGTGCAGTGGTAGACACGCCCCGATCTTCTCTTCTTGCACTCCCCACACGCAGAATCGCtgttggaggaggaggaggctaCCAGTTTTAG 3498 0.4365 MEKVATQVATPIFIHQSLSSRFCESPAMAKKRDLSYAASPNFVHQQLQNPSDNWNPKVWDWDTVRFVAKPLDTDMLRLGTPTTTAEDQRLPTVTNFNKNSTVDDDEEEESLRLNLGGCLAFNTVQEPMSRPNKRLRSRSPGGPSYPMCQVDNCKEDLSNAKDYHRRHKVCEVHSKSSKALVANQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQPEDVTSRLLPGNQDTANTTSSNLDIVDLLTTIARAQGKFVERSKICSQLPQRDQLVQILNRINSLPLPADLAAKLANVGNFCVNVPGQTSSDHHDKLNQNKSSPSTMDFLAVLSATLSASAPDAIALLSQKCSHSSDSEKSRTSGADQTTEPSLQTRQPLEFPSIGAERSSSSYQSPVEDSDCRVQETRINLPLQLFNSSPEDESLLKMPSSQKYLSSDSSNPLEERSPSSSPSLVQKQVALQSVIEGFKSNNIAIGRVVNTHKEAGQRHDCNISLDLFRGSNSKVQPSSMQSVPFQAGYRSSGSDYSPSSFNSDAQDRTGRIMFKLFDKDPSHFPGTLRTQIYNWLSNSPSEMESYIRPGCVILSVYVSMSSATWECLEENFLQHVHSLIQNSDSKFWRNGRFLVHAGSQLASHKDGKIRICKTWRTWRSPELISISPLAIVGGQETSISLKGRNLSTPGTKIHCTNMSCYTSEEVIGSVYSGMTCDEIKLGGFKVHNASPSVFGRCFIEVENGFKGNSFPVIIADATICKELQSLESELDMEVKLCDAIAEEHAYEFPRTGSREEALHFLNELGWLFQRKRSSYALEVPDYSLERFKFLLTFSVERNCLMLVKTLMDMLVEEHLEGEWLSKGSEEMLNAIQLLNRAVKRRFIEMVDLLVHYSIPSKNDASKKYIFPPSVEGPAGITPLHLAACTSGSEGLIDSLTNDPQEIGLKCWESLVDANGQTPYTYATMRNNHSYNMLIARKLADREKDQVSVTIENEIEQPSLRIELKPRSRNEVGQGHRSCAKCVVAAMHYNRRVLGPHRLLNRPYIHSVLAIAAVCVCVCLFFRGAPEIGSVAPFKSGDILEEDLPHALAKTLNEASEEVNDDLGSEAGSCSQHTGLDGALDTIGLEAVNHVLGTHRMEMVVAEGAVVDTPRSSLLALPTRRIAVGGGGGYQF 1165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0008 1165 MobiDBLite consensus disorder prediction 128 147 - -
Sto5g0008 1165 SUPERFAMILY Ankyrin repeat 828 970 IPR036770 -
Sto5g0008 1165 SUPERFAMILY SBT domain 146 226 IPR036893 GO:0003677|GO:0005634
Sto5g0008 1165 Gene3D - 831 991 IPR036770 -
Sto5g0008 1165 MobiDBLite consensus disorder prediction 355 406 - -
Sto5g0008 1165 MobiDBLite consensus disorder prediction 365 404 - -
Sto5g0008 1165 Pfam SBP domain 148 221 IPR004333 GO:0003677
Sto5g0008 1165 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 14 40 1069 - -
Sto5g0008 1165 MobiDBLite consensus disorder prediction 418 458 - -
Sto5g0008 1165 Gene3D - 139 209 IPR036893 GO:0003677|GO:0005634
Sto5g0008 1165 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 40 1069 IPR044817 GO:0003677
Sto5g0008 1165 MobiDBLite consensus disorder prediction 507 538 - -
Sto5g0008 1165 MobiDBLite consensus disorder prediction 212 240 - -
Sto5g0008 1165 ProSiteProfiles Zinc finger SBP-type profile. 145 222 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0008 Sto-Chr5 86845 93970 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0008 1 1072 SBP-box Gene Family AT1G20980 53.327 0.0 1025
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Sto5g0008 SBP 1.2e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0008 - - vvi:100240978 1346.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0008 5 86845 93970 Sto5g0008 5 86845 93970 ECH