Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g3045 ATGGAGGAAAACCTACCTCCAGGCTTCAGATTTCATCCTACAGATGAAGAGCTCATAACGTATTATTTAACAAGGAAAGTCTCTGATACCAGTTTCACATCCAAAGCTATAGCAGTTGTTGATCTCAACAAGAACGAGCCTTGGGATCttccagAGAAGGAATGGTATTTCTTCAGCTTGAGAGATCGAAAGTACCCGACAGGACTTCGAACAAACCGAGCAACAGAGTCAGGATACTGGAAAACGACAGGAAAAGACAAAGAAATAATGCGTAGTGGAGGAGTTTTGGTGGGAATGAAGAAAACCCTTGTGTTCTATAAGGGCAGAGCTCCAAAGGGTGAGAAAAGCAATTGGGAAGAATGGGTGGTTTGCAGAGTGTTCCAAAAAAGCTCAGCGACCAAGAAAACACAACAGACATCTTCCTCACAACCATCTATAGACTCCCCTAATTGTGACACCAATAATTCATTAGTGAATGAATTTGGTGACGTTGACCTCCCTAGCTTAAACACAAGTATTAATAATCCAAATTCATCAATTGCCTTCTCTACCATTTACAACAATGATCACACTACAAACATGAACTGGCCAGCTACAACTGATCTCCTTCCATGGTCTTCTGCTTTGCTAAATCCAAATCTTTCTGTGAATTCCTTGCTTCTCAAGGCATTGCACCTTAGGAATTGTCAACAAAGAGAAGCTGCTGCTCTCACCACAGACCATTTTGCCTCATATATGCAGCAACCTCAAGGAGTTCCCCAAGTTATGGGAACTGATAATCTCAGACTAGCTGCTTCTTCCTCATCAAAAGTGTTAGAATGCACGCCACAGCAACAGCAACAGGAGCAACCATTCAATTTGGACTCCATTTGGTGA 876 0.4189 MEENLPPGFRFHPTDEELITYYLTRKVSDTSFTSKAIAVVDLNKNEPWDLPEKEWYFFSLRDRKYPTGLRTNRATESGYWKTTGKDKEIMRSGGVLVGMKKTLVFYKGRAPKGEKSNWEEWVVCRVFQKSSATKKTQQTSSSQPSIDSPNCDTNNSLVNEFGDVDLPSLNTSINNPNSSIAFSTIYNNDHTTNMNWPATTDLLPWSSALLNPNLSVNSLLLKALHLRNCQQREAAALTTDHFASYMQQPQGVPQVMGTDNLRLAASSSSKVLECTPQQQQQEQPFNLDSIW 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g3045 291 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2 3 212 - -
Sto4g3045 291 MobiDBLite consensus disorder prediction 133 152 - -
Sto4g3045 291 Pfam No apical meristem (NAM) protein 6 118 IPR003441 GO:0003677|GO:0006355
Sto4g3045 291 MobiDBLite consensus disorder prediction 272 291 - -
Sto4g3045 291 Gene3D NAC domain 14 134 IPR036093 GO:0003677|GO:0006355
Sto4g3045 291 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 212 - -
Sto4g3045 291 ProSiteProfiles NAC domain profile. 5 156 IPR003441 GO:0003677|GO:0006355
Sto4g3045 291 SUPERFAMILY NAC domain 3 129 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g3045 Sto-Chr4 30650923 30653521 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g3045 1 291 NAC Transcription Factor Family AT3G18400 56.798 4.11e-104 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sto4g3045 NAM 3.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g3045 - - gmx:100775645 350.132