Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g3038 ATGGCTCTCCCCTGCAGTTCCGACGGAGCGTGTTTGGTGTGCAACACAAATCCCCTCGAAGAAGACAAGTTAACCTGCAAAACCTGCGTCGCCCAATGGCATGTGGCCTGTCTCTCTTCCCCTCCGGCAACCATGGCCGACACTCTTGAGTGGCGATGCCCCGACTGCACTACACCGCCTTCCGAGCTTGCTAAGGTGAGCGTCGGCAGCTCCGTACTGGGCGATAGGGCTGTGAACTTGATGGCTGGGTTTGAAGTGATTGAAGCTGATGCATCGCTGACGGAGAAGGAGAAGGCCATAAAACGCCAACAGCTCTTGAGTGGGAAGGGTGTGTCAGAAGAGGACGGAGTGAAAGCCAAGCCCAAATCCAAAGGAAAAGACGTCTTTGATATTCTTAGTGGCACTCTCAACTGCTCCTTCTGTATACAGCTGCCGGAGAGGCCCGTCAcgACCCCATGTGGCCACAATTTCTGCCTAAAATGCTTCCAGAAGTGGACTGCGCAAGGAAAACGAACATGTGTAAATTGTCGCAGCACTATCCCTCCCAAAATGGCGAGCCAGCCACGTATCAATTCTGCTCTTGTCATGGCCATTCGTATGGCAAAAGTATCCAAAAACATTGGTGCTGGGGAAACTTCAAGAGTTTACCGGTTTGTGCATAACCAAGATAGACCAGACAAGGCATATACTACGGAGCGTGCCCAAAGGAAAGGCAAATCAAATGCAGCAAGCGGAAAGATATTTGTGACTGTGCCTCAGGATCATTTTGGTCCAATCCCAGCTGAGAATGATCCAGCGCGGAATCAGGGCGTGCTCGTTGGTGAATGTTGGGAGGATAGGCTTGAATGCCGCCAATGGGGTGCTCACTTCCCACATGTTAGCGGTATTGCTGGACAGTCAAACTACGGTGCACAATCAGTGGTTCTTTCTGGTGGTTATGTTGATGACGAGGATCATGGAGAATATTTTCTCTATACAGGAAGGttgctttcttttccttttccatttctTGCTCTTGCTGCTCACTCTATATGCAACTTCACTTCTTATCCTTTTCGTTTGCTCTTCCTCTCCTCTCCTCTCAGTGGTGGCCGAGATCTGAGTGGGAATAAACGGACAAATAACACACAATCCTTTGACCAGAAGTTTGAAAAGTCCAACCTCGCTCTCAAACTTAGCTGTTTAAAAGGTTATCCGGTTCGGGTTGTAAGGTCTCACAAAGAGAAGCGATCCTCATATGCTCCTGAGAAAGGATTGCGTTATGATGGCGTTTACAGAATTGAAAAGTGTTGGCGGAAATTGGGATTGCAGGGTTTCAAAGTTTGCCGGTATTTATTTGTTAGATGCGACAATGAACCTGCCCCTTGGACAAGTGATGATCATGGCGATCGTCCCAGACCTTTGCCAGTAATTACAGAGTTGAAAGAGGCTATAGATTTGACTGAAAGGAAGGAAAATCCATCTTGGGATTATGATGAGGAAGAATCTTGTTGGAAATGGAAGAAACCACCACCTCCCAGTCAAAGGCATGTAAAAAGTGTGGATCCCAAGGAGATAGTAAGGTCAAGAAGAGAAATCAGGAAAGCCCAAAATGTGTCAATCAGGGAAAGACTGTTGAGAGGTATGATCACCTCTGCGTACTCTACTTATCCTCTATTGCAGAATCAGATTGTCCATTCCAGATTCGGTTGCCTTATCTGCAAGCAAGTTATGGTTTCTCCCGTGACAACACCCTGTGCTCATAATTTCTGCAAGTCATGTTTAGAAGGTGCGTTTGCGGGTCAGGCTTTTGTGAAAGAAAGAAGCAGGGGTGGAAGATCCCTTCGATCCCAGAAAAATGTGATGACATGTCCTGGTTGCCCTACTGACATCGCTGATTTTCTTCAGAATATTCAGATTAATACTGAGTTGAAGGGTGTGATTGAGTCATTGAAAGCTGAGGCTGAGGAAAATGGAGATTCCGAGGAGTTAAGTGATGGAGATGGAGGAGAAGAGGAGTGTGATGAAACTGATGCTGCAAAGGATGAAAACAAGGAAAATTCAGTTAATAAGCTTAATGATTCAACTGGCATTGAAGTTGAGGCAGGAGAAAGTGGAGTGGCCATTGAGGTGCCAGATTCAGTAGGCAAGTGCAATGTAAAAAGAAAGCGAGGTGATGCTAAAGAAGTTTCCCCTACAAAGACAAGGGGTAAAAGAGGTAGAGAGGCTGAGGATGAGGATGAAGGGAACGATTCACCATCAAGTCCTCTCCATTTGCCATCAGATCAAGACTGA 2274 0.4626 MALPCSSDGACLVCNTNPLEEDKLTCKTCVAQWHVACLSSPPATMADTLEWRCPDCTTPPSELAKVSVGSSVLGDRAVNLMAGFEVIEADASLTEKEKAIKRQQLLSGKGVSEEDGVKAKPKSKGKDVFDILSGTLNCSFCIQLPERPVTTPCGHNFCLKCFQKWTAQGKRTCVNCRSTIPPKMASQPRINSALVMAIRMAKVSKNIGAGETSRVYRFVHNQDRPDKAYTTERAQRKGKSNAASGKIFVTVPQDHFGPIPAENDPARNQGVLVGECWEDRLECRQWGAHFPHVSGIAGQSNYGAQSVVLSGGYVDDEDHGEYFLYTGRLLSFPFPFLALAAHSICNFTSYPFRLLFLSSPLSGGRDLSGNKRTNNTQSFDQKFEKSNLALKLSCLKGYPVRVVRSHKEKRSSYAPEKGLRYDGVYRIEKCWRKLGLQGFKVCRYLFVRCDNEPAPWTSDDHGDRPRPLPVITELKEAIDLTERKENPSWDYDEEESCWKWKKPPPPSQRHVKSVDPKEIVRSRREIRKAQNVSIRERLLRGMITSAYSTYPLLQNQIVHSRFGCLICKQVMVSPVTTPCAHNFCKSCLEGAFAGQAFVKERSRGGRSLRSQKNVMTCPGCPTDIADFLQNIQINTELKGVIESLKAEAEENGDSEELSDGDGGEEECDETDAAKDENKENSVNKLNDSTGIEVEAGESGVAIEVPDSVGKCNVKRKRGDAKEVSPTKTRGKRGREAEDEDEGNDSPSSPLHLPSDQD 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g3038 757 ProSitePatterns Zinc finger RING-type signature. 579 588 IPR017907 -
Sto4g3038 757 SUPERFAMILY RING/U-box 557 646 - -
Sto4g3038 757 Pfam RING-type zinc-finger 564 618 IPR027370 -
Sto4g3038 757 SMART PHD_3 10 57 IPR001965 -
Sto4g3038 757 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 72 IPR013083 -
Sto4g3038 757 SUPERFAMILY PUA domain-like 241 328 IPR015947 -
Sto4g3038 757 ProSiteProfiles Zinc finger RING-type profile. 564 620 IPR001841 -
Sto4g3038 757 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 553 669 IPR013083 -
Sto4g3038 757 ProSitePatterns Zinc finger PHD-type signature. 11 56 IPR019786 -
Sto4g3038 757 SMART G9a_1 261 452 IPR003105 -
Sto4g3038 757 ProSiteProfiles YDG domain profile. 266 448 IPR003105 -
Sto4g3038 757 MobiDBLite consensus disorder prediction 709 739 - -
Sto4g3038 757 Pfam Zinc finger, C3HC4 type (RING finger) 136 180 - -
Sto4g3038 757 SUPERFAMILY PUA domain-like 362 482 IPR015947 -
Sto4g3038 757 Gene3D - 237 470 IPR036987 -
Sto4g3038 757 SUPERFAMILY RING/U-box 131 194 - -
Sto4g3038 757 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 362 686 IPR045134 -
Sto4g3038 757 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 2 327 IPR045134 -
Sto4g3038 757 MobiDBLite consensus disorder prediction 646 757 - -
Sto4g3038 757 Pfam SAD/SRA domain 268 451 IPR003105 -
Sto4g3038 757 SMART ring_2 138 176 IPR001841 -
Sto4g3038 757 SMART ring_2 11 56 IPR001841 -
Sto4g3038 757 SMART ring_2 564 620 IPR001841 -
Sto4g3038 757 SUPERFAMILY FYVE/PHD zinc finger 4 61 IPR011011 -
Sto4g3038 757 MobiDBLite consensus disorder prediction 652 672 - -
Sto4g3038 757 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 204 IPR013083 -
Sto4g3038 757 ProSiteProfiles Zinc finger PHD-type profile. 8 59 IPR019787 -
Sto4g3038 757 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 2 327 - -
Sto4g3038 757 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 362 686 - -
Sto4g3038 757 ProSiteProfiles Zinc finger RING-type profile. 138 177 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g3038 Sto-Chr4 30606417 30609639 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g3038 3 650 C2H2 Transcription Factor Family AT5G39550 55.231 0.0 699