Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g2981 ATGAGTCTCGAAGCCCCAGTGAATGGCGAAACAAGATCCCTCCACAACCCAAATTTGATGGAGAACATGGAAATTCCTCGTCCCATGGAGGTTGTTGACGTCGAAGATTTTTGCTTCACACCAATCTCCCACAAGGGCACCACCCAATCCAATGCGATCTCCGTCGAGCAATACTCTCACGACAGAGACCTCCACCTCGCGATCATGGCTTCTCTGGCTCAAACAACCCACGCTTCGGGAATCTGCATCGACCTTTCCTCCTCCGATGACGACGAGGTGAGAGTTCTTAGGTTTAAACCTCAAAACACTCCTTTTGGAAGACGAAGAAGAAACTCTCCAAATTCCTTCGTTTTCACTACCGAAAAAGGCGAATCTTCCAATTCCGTACCGTTTGTTTGTGAAATTTGCGCCGAGACTAAGCCTGCGAACGAGTCGTTTGGCATCAATGGCTGCTCTCACGCTTATTGCAACGAGTGTGTGATGAGGTACGTAGCGTCTAAGCTACAAGAAAACATCGTTAATATTCGCTGCCCTGTATCTGAGTGCAGAGGATTATTGGAACCTGAGGATTGCCGTGGAATTCTGCCTCCGGAAGTTTATGATCGCTGGGGTAATGCTTTGTGTGAGGCAGTGATTCTTGCGGATCAGAAATTTTACTGTCCGTATAAGGATTGCTCTGTGCTATtgattgatgatgaaggaggGGTTATCAAAGAGTCAGAGTGTCCCAATTGTAAGAGATTGTTCTGTGCACAGTGTAAGGTCCCATGGCATTCTGGAATTGAATGTGAAGAGTTTCAGAAATTGAGTAaggacgagagagagaaagaagatatCATGCTGATGCAGCTTGCTCAGAACAAGGGGTGGAGGAGGTGTCCTAAGTGCAGATTCTACGTTGAGAAATCTGTTGGCTGTATGTACATGAAATGCAGGTGTGGAATTGCCTTCTGTTACAACTGTGGAACTATTTCAACAAGTAACTCCCATATGTGCTCTAAGTGTAAACGCTGA 1014 0.4428 MSLEAPVNGETRSLHNPNLMENMEIPRPMEVVDVEDFCFTPISHKGTTQSNAISVEQYSHDRDLHLAIMASLAQTTHASGICIDLSSSDDDEVRVLRFKPQNTPFGRRRRNSPNSFVFTTEKGESSNSVPFVCEICAETKPANESFGINGCSHAYCNECVMRYVASKLQENIVNIRCPVSECRGLLEPEDCRGILPPEVYDRWGNALCEAVILADQKFYCPYKDCSVLLIDDEGGVIKESECPNCKRLFCAQCKVPWHSGIECEEFQKLSKDEREKEDIMLMQLAQNKGWRRCPKCRFYVEKSVGCMYMKCRCGIAFCYNCGTISTSNSHMCSKCKR 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g2981 337 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 32 336 IPR031127 GO:0004842|GO:0016567
Sto4g2981 337 SUPERFAMILY RING/U-box 274 336 - -
Sto4g2981 337 SMART ibrneu5 273 335 IPR002867 -
Sto4g2981 337 SMART ibrneu5 201 263 IPR002867 -
Sto4g2981 337 ProSitePatterns Zinc finger RING-type signature. 151 160 IPR017907 -
Sto4g2981 337 ProSiteProfiles Zinc finger RING-type profile. 133 181 IPR001841 -
Sto4g2981 337 SUPERFAMILY RING/U-box 130 210 - -
Sto4g2981 337 Gene3D - 260 337 - -
Sto4g2981 337 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 32 336 - -
Sto4g2981 337 Pfam IBR domain, a half RING-finger domain 212 263 IPR002867 -
Sto4g2981 337 SUPERFAMILY RING/U-box 208 268 - -
Sto4g2981 337 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 214 IPR013083 -
Sto4g2981 337 ProSiteProfiles TRIAD supradomain profile. 129 337 IPR044066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g2981 Sto-Chr4 30178736 30180510 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g2981 133 323 C3H Transcription Factor Family AT2G19610 29.557 2.03e-23 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g2981 K11975 - twl:120005643 435.261