Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g2968 ATGACTGACGGTGCGAAGACAGCCAACGAGAATGTTCTTCCACAACAGAGGACAATCTCACCCTACGATCTAACGTCTCTCGACAATCCCGGACTTTCAATCACTCAAGTGCACCTCAAAGGCGATAACTATGATGAGTGGGCTCGAGACATACGGACGGCATTAAGAGCTCGCAAGAAATTCGGTTTCGTCGATGGAACCATTCCCAAGCCGGAGGAGAAGTCTTGCGATCTGGAAGACTGGTGGACCATTAACTCATTGTTGGTGTCTTGGATCAGAAACACCATTGAACCTGGGTTGCGATCTTCTATTTCTCACAGGGAAGTGGCGCGAGACTTGTGGAACCATCTTAAGGAAAGATTCTCTGTTACGGACGGACCATGCATACAGCAGCTGCGGCTAAACCTTGCCAATTGCAAACAAAAAGGTATGACCATAGTTGATTATTTTGGTCGGCTTGAACAACTATGGGACGAGCTGTCGAATTTTGATCCCGTTCCGACTTGCAAGTGTGGTGGCTGCACTTGCAACATCACGACAACTCTGGAGAAGAAACGTGAGGATGAACGTGTGCACACCTTTCTTTTGGGTCTCGACGATAACTTATATAGCACTGTGCGATCTACAGTTCTTGCTCAAGACCCTCTTCCCAGTGTCAATAAGGTGTACTCCATTCTAATACAGGAAGAACGTGTGAAAACTATGGCTCGTGCCAAAGACGACCAAGTGGAAGTCATGGCACTCGCTACACGAACCAGACATGACTCGCGCGACAAAAATATGGTGTGCTCACACTGCAAGAAGACTGGCCATGATAGTGCCAATTGCTTTGCGCTTGTTGGATATCCCGAATGGTGGGGAGATAGACCATGCGGCGATGGTAAAGGGTCTGGACGAGCCACCCCACAAGATCCTATGAGCAACAATAATGCAGAAGTTTCAACCCCATCTGCTGACCAATTGGGACGAGGCCATCGACGTAAGGATGTCTCAGTTCGACTTCGAGATTTTGTGACACATACCATTCAAGTAAAGAGTCCATCGGCGTCTTCTCCACCTGCACCACAGCTTTCCTCAGGAGAACGGAAGACTATCAATTCAGAGTTATGGCATGCTTGTGCTGGACCATTGGTTTCTTTGCCTCCTGTTGGAAGTCTTGTGGTTTACTTTCCTCAAGGACACAGCGAGCAAGTTGCTGCGTCCATGCAAAAGGAGGCTGATATTATACCCAGTTACCCCAATCTTCCATCTAAGCTGATTTGCATGCTTCACAATGTTACCCTGCATGCTGATATTGAAACTGACGAGGTTTATGCACAGATGACTCTACAACCTGTAAACAAATATGACAGGGAAGCAATGCTAGCATCAGACTTGGGTCTCAAGCAAAGCCGACAACCTACTGAATTCTTCTGCAAAACTCTCACTGCTAGTGACACAAGCACTCATGGTGGATTTTCTGTACCACGTAGAGCAGCTGAGAAAATATTCCCAGCTCTGgaTTATTCAATGCAACCTCCAGCTCAGGAACTTGTTGCCAAAGATTTGCATGACAATACATGGACATTCAGACATATTTATCGCGGACAACCAAAGAGGCATCTACTAACAACTGGTTGGAGTGTCTTTGTTAGCACAAAAAGATTGTTCGCTGGAGATTCTGTTCTTTTTATCAGAGATGAAAAGCAGCAACTTCTTTTAGGTATAAAGCGCGCTAATAGACAGCAGCCGGCTCTTTCTTCATCAGTCATATCCAGTGACAGCATGCATATTGGCATTCTAGCTGCTGCAGCTCATGCTGCTGCAAATAACAGCCCATTTACAATATTTTACAATCCAAGGGCCAGCCCTGCTGAATTTGTCATTCCATTGGCTAAATATAATAAAGCCATGTATACTCAAGTTTCACTTGGAATGAGATTTAGGATGATGTTTGAGACTGAGGAGTCTGGAGTGCGCAGATACATGGGTACAATCACTGGGATCAGTGACTTGGATCCTGCGCGATGGAAGAACTCACAGTGGCGCAATCTTCAGGTTGGATGGGATGAATCAACAGCTGGTGAACGACCGACCAGAGTTTCAGTTTGGGAAATTGAACCAGTAGTGACACCTTTCTACATTTGCCCACCTCCGTTTTTCAGGCCCAAGTTCTCAAAGCAATCAGGAATGCCGGATGATGAATTTGATATGGAAAATGCTTTCAAGAGAGCTATGCCTTGGCTTGGAGATGACTTTGGCGTGAAGGATGCCTCAAGTTCTATTTTTCCTGGTTTGAGTCTTGTGCAGTGGATGAGCATGCAGCAGAATAATCAGTTTTCTTCCATGCTTTCGTCTAATTCCCTGAATAGTAGTAACCTTAGCACTGATGATCCATCAAAGTTATTGAGTTTTCAAACCCCTGTACTCTCTTCACAAACTATTCAATTTAACAAACCCAATTTACCAAATCAAGCGAACCAATTGCAACAGCCCCAGATTCCAACTCAGAGTGTGCAGCAACCAGTTACCTACTCTCAGCTTCAGCAGCAGCAACTACCCTCAAGCAATATCCCACCCCAGCAAAGTATTCAGCCAACTGGTAAGAATACATTCCCTTTGACATCCTTGCCGCCACAAGATTCACAATTTCAACATCCGATAGACCAGCAAGCTTGTCTCTCACAGAGACAGCAGCAGCAAACACAGTTGCAACAGTCCCCAATGCAATTATTACAACAAAAACTGTCTCAAAGGGTGCCACAGCAACTACAAGTGACTCAACTTTCTCAGCAAAACCTCTCAGAGCAACATTTACAGTTGCTACAGAAATTGCAGCAGCAACAACAAGTTCTTCCCACATCCAGCTCGCTATTGCAGTCTCAGTTGCTACAGCAACAAAATGCTAATCAACAAAACCAGCAACTACATCAGCTGCCTCTATCTCAGCATCAACCTCAACAGCTTAGCAATAATGCCTTCTCAACAGAGAATCTACTGAACAGCAATAAATTTTCATCTCCAGCTTTGATGCAATCACAACAAGTTCCTGTGAACCAACCCCAGAACACACagaaaccacttggaattaCCAGGGTGCCTTCTAGTTTTAATGATGGTGATGCCCCATCTTGCTCAACCTCACCATCAACAAATAATGTCCATACTTCTCCACCAAATATCCTGAAAAAGAATCAACAAGTATCGGCCACATTAGGCGGTAGCTTGGTAGTTGAGCCAACTAGTAATCTGTTACAGGAGCTTCAGAATAAGTCTGATGTCCAGATCAAACATGAGCTTCCAAATGTTAAAGGACCTGAGCACCTAAGGTATAAAGGGACAATTACTGATCAGCTGGAAGCTTTGTCTTCTGGAACATCTTACTATCTTGATCCGGGTAACGTCCAGCAGAGCCTTCCACTTCCCAACTTTTGCATGGAAGGGGATATACAATCACAGCCTAGGAACAATCTACCATTTGCCCCTAATCTTGATGGACTACCTCCTGATACTTTACTCTCAAGTGGGTATGACTCTCAAAAAGATCTTCAGAACTTGCTCTCTAATTATGGCGGTGCTCCAAGAGACATTGAAACTGAGCTGTCCACTCCTGACATCAGCTCGCAGTCATTTGGAGTGCCAAACATGCCTTTTAAACCTGGTTGTTCCAGTGATGTTGCCATCAATGATACTGGGGTTTTGAATAATGGCCTGTGGACTAACCAGACTCAACGAATGAGAACATATACTAAGGTTCAAAAGCGTGGCTCTGTGGGAAGATGTATTGATGTGACTCGTTACAAGGGATACGATGAGCTCAGGTATGATTTGGCTCGGATGTTTGGTATCGAAGGTCAACTAGAAGATCCTCAAAGGACTGAGTGGAAATTAGTATATGTGGATCATGAAAACGACATTCTTCTTGTTGGCGATGACCCTTGGGAAGAATTTGTAAGCTGTGTCCAGAGCATAAAAATACTATCATCTGCTGAGGTGCAACAGATGAGCTTAGATGGAGATTTAGGCAATGTTGCACTCCCTCATCAAGCTTGTAGTGGGACCGACAGTGGCAATGCATGGAGAGGACAGTATGATGATAACTCTGCTGCTTCATTTAATCGATAA 4104 0.4457 MTDGAKTANENVLPQQRTISPYDLTSLDNPGLSITQVHLKGDNYDEWARDIRTALRARKKFGFVDGTIPKPEEKSCDLEDWWTINSLLVSWIRNTIEPGLRSSISHREVARDLWNHLKERFSVTDGPCIQQLRLNLANCKQKGMTIVDYFGRLEQLWDELSNFDPVPTCKCGGCTCNITTTLEKKREDERVHTFLLGLDDNLYSTVRSTVLAQDPLPSVNKVYSILIQEERVKTMARAKDDQVEVMALATRTRHDSRDKNMVCSHCKKTGHDSANCFALVGYPEWWGDRPCGDGKGSGRATPQDPMSNNNAEVSTPSADQLGRGHRRKDVSVRLRDFVTHTIQVKSPSASSPPAPQLSSGERKTINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKEADIIPSYPNLPSKLICMLHNVTLHADIETDEVYAQMTLQPVNKYDREAMLASDLGLKQSRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPALDYSMQPPAQELVAKDLHDNTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKQQLLLGIKRANRQQPALSSSVISSDSMHIGILAAAAHAAANNSPFTIFYNPRASPAEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPARWKNSQWRNLQVGWDESTAGERPTRVSVWEIEPVVTPFYICPPPFFRPKFSKQSGMPDDEFDMENAFKRAMPWLGDDFGVKDASSSIFPGLSLVQWMSMQQNNQFSSMLSSNSLNSSNLSTDDPSKLLSFQTPVLSSQTIQFNKPNLPNQANQLQQPQIPTQSVQQPVTYSQLQQQQLPSSNIPPQQSIQPTGKNTFPLTSLPPQDSQFQHPIDQQACLSQRQQQQTQLQQSPMQLLQQKLSQRVPQQLQVTQLSQQNLSEQHLQLLQKLQQQQQVLPTSSSLLQSQLLQQQNANQQNQQLHQLPLSQHQPQQLSNNAFSTENLLNSNKFSSPALMQSQQVPVNQPQNTQKPLGITRVPSSFNDGDAPSCSTSPSTNNVHTSPPNILKKNQQVSATLGGSLVVEPTSNLLQELQNKSDVQIKHELPNVKGPEHLRYKGTITDQLEALSSGTSYYLDPGNVQQSLPLPNFCMEGDIQSQPRNNLPFAPNLDGLPPDTLLSSGYDSQKDLQNLLSNYGGAPRDIETELSTPDISSQSFGVPNMPFKPGCSSDVAINDTGVLNNGLWTNQTQRMRTYTKVQKRGSVGRCIDVTRYKGYDELRYDLARMFGIEGQLEDPQRTEWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGDLGNVALPHQACSGTDSGNAWRGQYDDNSAASFNR 1367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g2968 1367 Pfam Retrotransposon gag protein 102 199 IPR005162 -
Sto4g2968 1367 Pfam AUX/IAA family 1237 1326 IPR033389 -
Sto4g2968 1367 SUPERFAMILY DNA-binding pseudobarrel domain 461 600 IPR015300 -
Sto4g2968 1367 MobiDBLite consensus disorder prediction 301 317 - -
Sto4g2968 1367 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 351 820 IPR044835 GO:0003677|GO:0006355|GO:0009725
Sto4g2968 1367 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 842 1355 IPR044835 GO:0003677|GO:0006355|GO:0009725
Sto4g2968 1367 Gene3D - 469 572 IPR015300 -
Sto4g2968 1367 ProSiteProfiles PB1 domain profile. 1240 1333 IPR000270 GO:0005515
Sto4g2968 1367 SMART B3_2 471 573 IPR003340 GO:0003677
Sto4g2968 1367 Pfam gag-polypeptide of LTR copia-type 27 72 IPR029472 -
Sto4g2968 1367 Gene3D - 1235 1329 - -
Sto4g2968 1367 MobiDBLite consensus disorder prediction 810 877 - -
Sto4g2968 1367 CDD B3_DNA 470 562 IPR003340 GO:0003677
Sto4g2968 1367 MobiDBLite consensus disorder prediction 293 330 - -
Sto4g2968 1367 PANTHER AUXIN RESPONSE FACTOR 19 351 820 - -
Sto4g2968 1367 PANTHER AUXIN RESPONSE FACTOR 19 842 1355 - -
Sto4g2968 1367 Pfam B3 DNA binding domain 471 572 IPR003340 GO:0003677
Sto4g2968 1367 SUPERFAMILY CAD & PB1 domains 1253 1318 - -
Sto4g2968 1367 MobiDBLite consensus disorder prediction 341 360 - -
Sto4g2968 1367 Pfam Auxin response factor 597 679 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Sto4g2968 1367 Gene3D - 634 705 - -
Sto4g2968 1367 MobiDBLite consensus disorder prediction 1032 1053 - -
Sto4g2968 1367 ProSiteProfiles B3 DNA-binding domain profile. 471 573 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g2968 Sto-Chr4 30037064 30053639 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g2968 355 826 B3 DNA Binding Superfamily AT1G19220 81.667 0.0 803
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Sto4g2968 AUX_IAA 2.9e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g2968 K14486 - oeu:111366891 1206.82