Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g2945 ATGGAAATTGTTCGATCTCAGAGCCACAGGAAAATTTCACCTAACAATGTTACTAACACCCTTCCACTCTATCGTTCTGCTCCACCACTCGAAGTCAGGCTCGAGGATTTCGAGTTGTACGCCTTGGATCGTCTCCGAGTTCTTAAGGGGATTTCTGATGGTTTATCTCGGGGAAAGAGACCAGAAGAAATGGAAAAATTGGTGGGCAAGCTGTGGAAAGAAAATATGAGACATCAACAGGCATCCGAGATTGTAAACAAGGATATCATATCTCATTTTGTTCTACGTCTTGTGTATTGCAGAACTGAGGAGTTGAGGAAATGGTTCCTATCTATGGAAACTTCACTATTTCGATACCGTTTTCGTCTTGAAAATGCTGAAGCTCAGAGGGCACTCATGGCAGAATTTGACCTTTCTTCCAGGGCTGTTAGCAATGTGGAATTTGAGAGTATAAAGGAAAAACTGGGACAAGTTGCACGATCCATGGGCCAGTCTTTACCCACGGCTGATGCTATCTTTTACAAGGTACCATTTGAAGAAGTTCCAGAGCTTGTAGCTGGTCGGAAAGTATTTATAAATCAAGGTTTTGCTTATGTTGCAATGACTCAGGCTGTTTCACTGGTAGCCACACTATTCCGCAGTCTGCTATCCAAGGCACTTGTACTGACAAACAGAAAATGGACATCTACAATAAGAGAACAAGAAAAAGATAGATTGACTCCTATTGTGGAAGCCCTATGCTCAAGTTATTTGGGTCCTGACTTTTCTCAGATGCAGATTGTTGAGGGCTTGGCTAGCTTGTCGCAAAACTACTTCATGGATGACCAAGGTGGGAAGCATTTTGAGCCAAGGGGCCATGGAGAGATTTCAGTAAAGGACATTGATCAAGTTGCTAAGAGCTCATTTCCTTTGTGCATGCGGAACCTATTGGAAAAGCTGAGAGAGGATCACCATTTAAAGCATGGAGGGAGGATGCAACTAGGCCTCTTTCTCAAGGGTGTTGGCTTGAATCTGGATGACGCACTTGCATTTTGGAGATATGAATTCTCTCAAAAGGTTGGACTAGAGAGGTTTGAGAAAGAATATGCATATAGCATACGCCATAATTATGGACAGGAAGGAAAGAGAACTGATTATACAGCCTATTCCTGTCAAAAGATTATTTCGTCAACTCCTGGCGTTGGAGATCATCATGGCTGTCCCTATCGACATTTCAGTGAAGAGAATCTTAGAGCTGCTCTCACCAGAATGGGGATGAATGGCCGAGCAATGGAAGATGTGATGAACAAAGTACGGAATAGACATTATCAGTTGGCTTGCACCTTGACATTTGAAGCTATTCATGGCGTGCCTAATGATGCGGGGATTAACCATCCGACTCAATACTTCAGTGATAGTCAAAAGATATTGCAGCCAGAGCTGAGGGATATTATTGTAGCACTTTTTGGTGGTGGTCTTGGTTGGTGTATTTTGTCACAAACATCGAATGTTTGGGAGGGAGTTTGA 1506 0.4296 MEIVRSQSHRKISPNNVTNTLPLYRSAPPLEVRLEDFELYALDRLRVLKGISDGLSRGKRPEEMEKLVGKLWKENMRHQQASEIVNKDIISHFVLRLVYCRTEELRKWFLSMETSLFRYRFRLENAEAQRALMAEFDLSSRAVSNVEFESIKEKLGQVARSMGQSLPTADAIFYKVPFEEVPELVAGRKVFINQGFAYVAMTQAVSLVATLFRSLLSKALVLTNRKWTSTIREQEKDRLTPIVEALCSSYLGPDFSQMQIVEGLASLSQNYFMDDQGGKHFEPRGHGEISVKDIDQVAKSSFPLCMRNLLEKLREDHHLKHGGRMQLGLFLKGVGLNLDDALAFWRYEFSQKVGLERFEKEYAYSIRHNYGQEGKRTDYTAYSCQKIISSTPGVGDHHGCPYRHFSEENLRAALTRMGMNGRAMEDVMNKVRNRHYQLACTLTFEAIHGVPNDAGINHPTQYFSDSQKILQPELRDIIVALFGGGLGWCILSQTSNVWEGV 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g2945 501 PIRSF DNA_primase_large 2 476 IPR016558 -
Sto4g2945 501 Gene3D - 2 246 - -
Sto4g2945 501 PANTHER DNA PRIMASE LARGE SUBUNIT 1 258 IPR007238 GO:0006269
Sto4g2945 501 PANTHER DNA PRIMASE LARGE SUBUNIT 284 475 IPR007238 GO:0006269
Sto4g2945 501 CDD PriL_PriS_Eukaryotic 23 466 IPR016558 -
Sto4g2945 501 PANTHER DNA PRIMASE LARGE SUBUNIT 1 258 - -
Sto4g2945 501 PANTHER DNA PRIMASE LARGE SUBUNIT 284 475 - -
Sto4g2945 501 Pfam Eukaryotic and archaeal DNA primase, large subunit 173 463 IPR007238 GO:0006269
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g2945 Sto-Chr4 29869427 29879030 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g2945 1 471 Core DNA Replication Machinery Family AT1G67320 63.386 0.0 648
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g2945 K02685 - gmx:100806321 736.487