Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g2943 ATGGCGGCTACATTTACAACCCTGTCAAACGTTGGGTCGCTGTCGAGTCCGGGCAGATGCGCGCAGATCGGAGTTTTGAACCCTGCGAGTAATGCTAGTTCAATCAAGCTCGCTGGACTTCCTTCGCGGCGCTCGAATATGTGCTCCTCTTTAAGCACCTTCACCGGTTCGTTGCGTTTGGAGCATTCCATTTGTTTTGGGCATGCTTCTTCTCGAGAAAGAACGCGTTCTTCCAGCTTGGTCCGAGCCAGCTCTGTGgAAGCGCCTTTACAATCAAAAGTTACGCAAAAGGTGTATTTTGACATAAGCATTGGGAATCCAGTGGGGAAGCTTGCAGGAAGGATTGTGATTGGACTCTATGGTGATGATGTGCCCCAAACAGCAGAAAACTTCCGTGCCCTTTGTACAGGAGAGAAGGGCTTTGGGTACAAAGGTTCTACATTCCATCGTGTAATAAAGGATTTCATGATTCAAGGAGGGGACTTCGACAAAGGGAATGGAACTGGAGGCAAGAGTATTTATGGTCGCACCTTCAAAGACGAGAATTTTAAGTtgGCTCATGTGGGACCAGGAGTCGTTAGCATGGCAAATGCAGGCCCAAACACCAATGGGAGTCAGTTTTTCATATGCACCGTCAAGACTCCATGGTTGGATCAGAGGCATGTTGTATTTGGCCAAGTTTTGGAAGGCATGGATATTGTTAAGTTAATTGAGTCACAGGACACAGATCGAGGTGACCGTCCAAGGAAGAAGGTGGTTGTCATTGACTCTGGTGAGCTTCCAATTGCTTGA 792 0.476 MAATFTTLSNVGSLSSPGRCAQIGVLNPASNASSIKLAGLPSRRSNMCSSLSTFTGSLRLEHSICFGHASSRERTRSSSLVRASSVEAPLQSKVTQKVYFDISIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFKLAHVGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVKLIESQDTDRGDRPRKKVVVIDSGELPIA 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g2943 263 Gene3D - 83 262 IPR029000 -
Sto4g2943 263 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 119 134 IPR002130 GO:0000413|GO:0003755
Sto4g2943 263 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 148 160 IPR002130 GO:0000413|GO:0003755
Sto4g2943 263 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 191 206 IPR002130 GO:0000413|GO:0003755
Sto4g2943 263 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 206 218 IPR002130 GO:0000413|GO:0003755
Sto4g2943 263 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 219 234 IPR002130 GO:0000413|GO:0003755
Sto4g2943 263 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 45 260 - -
Sto4g2943 263 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 109 259 IPR002130 GO:0000413|GO:0003755
Sto4g2943 263 CDD cyclophilin_ABH_like 97 258 - -
Sto4g2943 263 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 143 160 IPR020892 GO:0003755|GO:0006457
Sto4g2943 263 SUPERFAMILY Cyclophilin-like 89 260 IPR029000 -
Sto4g2943 263 PANTHER PHOTOSYNTHETIC NDH SUBUNIT OF LUMENAL LOCATION 5, CHLOROPLASTIC 45 260 - -
Sto4g2943 263 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 110 256 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g2943 Sto-Chr4 29851104 29856190 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g2943 113 257 U-box Gene Family AT5G67530 47.945 1.11e-35 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g2943 K03768 - vvi:100248997 395.586