Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g2868 ATGGAAACGGCATGCTTGAACTGCAATGGAGTCGTCTCACgtaagaaaattttgaaatctgTTTCTGCACAGACAGCAATCTCTGATAGTGACAATGGTTGCTTTGAGTGCAATATATGCCTGGAGTCAGCGCATGACCCTGTGGTCACTTTGTGTGGTCACCTTTACTGCTGGCCATGCATATTCAGGTGGCTTCAAGTCCAAAACTCCTCTGATGAATCAGACCAGCGACCTACGTGTCCTATTTGTAAAGCTGACATCTCCCATACTTCATTAGTCCCCCTGTATGGCCGTGGAACTTCTAGCTCAGATTATGAAGCCAAGAAACCCAAGATTGATCTAGGAATACCTCGTAGACCCCCTCCTCTCAGTTTGAATGAATCTCAGCCATTTCATTATCAGCAATACTTCCCTCACCTTTATCGAGGTTATCCTGCAAATGGATCACCATATCTTGGGGGAGCAGCTATGCCTAGTTTCTCCGATCCAATTATCGGTATGTTCGGGGACATGGTGTTCACAAGGATTTTTGGGAGCTCTGATGCTAATTTGTTGGCATATCCTTATGTCAATTACTACCCTCATAATGGAAATGGCAGTCTTAGAATGAGAAGACTGGAAATGCAGATTGACAAGTCTCTTAGCAGAGTATTTGTCTTTCTTCTCTGTTGTATCATTCTGTGTCTTCTGTTGTTCTGA 699 0.4292 METACLNCNGVVSRKKILKSVSAQTAISDSDNGCFECNICLESAHDPVVTLCGHLYCWPCIFRWLQVQNSSDESDQRPTCPICKADISHTSLVPLYGRGTSSSDYEAKKPKIDLGIPRRPPPLSLNESQPFHYQQYFPHLYRGYPANGSPYLGGAAMPSFSDPIIGMFGDMVFTRIFGSSDANLLAYPYVNYYPHNGNGSLRMRRLEMQIDKSLSRVFVFLLCCIILCLLLF 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g2868 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 95 IPR013083 -
Sto4g2868 232 SUPERFAMILY RING/U-box 33 96 - -
Sto4g2868 232 ProSitePatterns Zinc finger RING-type signature. 52 61 IPR017907 -
Sto4g2868 232 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 6 232 IPR045103 GO:0005783|GO:0006511|GO:0061630
Sto4g2868 232 Pfam RING-type zinc-finger 37 81 IPR027370 -
Sto4g2868 232 ProSiteProfiles Zinc finger RING-type profile. 37 84 IPR001841 -
Sto4g2868 232 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA3-LIKE 6 232 - -
Sto4g2868 232 SMART ring_2 37 83 IPR001841 -
Sto4g2868 232 CDD RING-HC_AtRMA_like 35 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g2868 Sto-Chr4 29350542 29351309 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g2868 9 217 C3H Transcription Factor Family AT4G27470 46.522 2.09e-55 176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto4g2868 4 29350542 29351309 Sto4g2868 4 29350542 29351309 ECH