Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g2841 ATGGAGGCCAAGAGTATTGAGAGGAAGAGAACTTCCATTGAGAAGGACAAGAGGAAAGGAGTTATGGGGAGTGTAAGGAGAGGGTCAAGTGGTGGAGTTTCACCACCTTCTTGTCAGGCAGAGAGGTGTGGCGCTGATCTGACCGATGCAAAGCGGTACCATCGCCGCCATAAGGTGTGCGAGTTTCACTCCAAGGCCCCGGTTGTGATGGTTGCAGGGCAGAGGCAGAGGTTTTGCCAGCAATGTAGCAGGTTCCATGACTTGGGGGAATTTgatgaagccaagagaagctgCCGGAGACGGTTGGCCGGACACAACGAGCGGCGCCGGAAGAGCACGGCTGAAATTTACAGTGAGGGCTGCAGCCGTGGCAAAGGTCACCACACAAAGGAGAGCCAATGCAGGCATGCTGATGACAGAGGAAGAGTTCAGATGAGCATTTCTGGGAGTTCTGGCTACAAATCTTTCCACATCATATAA 480 0.5083 MEAKSIERKRTSIEKDKRKGVMGSVRRGSSGGVSPPSCQAERCGADLTDAKRYHRRHKVCEFHSKAPVVMVAGQRQRFCQQCSRFHDLGEFDEAKRSCRRRLAGHNERRRKSTAEIYSEGCSRGKGHHTKESQCRHADDRGRVQMSISGSSGYKSFHII 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g2841 159 Pfam SBP domain 38 111 IPR004333 GO:0003677
Sto4g2841 159 MobiDBLite consensus disorder prediction 103 148 - -
Sto4g2841 159 SUPERFAMILY SBT domain 36 116 IPR036893 GO:0003677|GO:0005634
Sto4g2841 159 ProSiteProfiles Zinc finger SBP-type profile. 35 112 IPR004333 GO:0003677
Sto4g2841 159 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 17 158 IPR044817 GO:0003677
Sto4g2841 159 Gene3D - 28 99 IPR036893 GO:0003677|GO:0005634
Sto4g2841 159 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 17 158 - -
Sto4g2841 159 MobiDBLite consensus disorder prediction 108 142 - -
Sto4g2841 159 MobiDBLite consensus disorder prediction 1 23 - -
Sto4g2841 159 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g2841 Sto-Chr4 29159672 29160783 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g2841 17 151 SBP-box Gene Family AT3G15270 55.147 2.71e-42 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Sto4g2841 SBP 6.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g2841 - - aprc:113864686 219.164
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto7g0234 7 1676155 1676762 Sto4g2841 4 29159672 29160783 ECH
Sto7g0509 7 3757882 3758407 Sto4g2841 4 29159672 29160783 ECH
Sto4g2841 4 29159672 29160783 Sto13g2203 13 28885112 28897927 ECH
Sto4g2841 4 29159672 29160783 Sto4g2841 4 29159672 29160783 ECH