Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g2831 ATGGCTCCCAGAGATAGGCCCACTTCACTCCCTGGATCTGACCCGGCCCACACCGTCAAGGAGATCCGATACAGAGGTGTACGCAAGAGGCCGTGGGGGCGATACGCCGCTGAGATTCGTGATCCCGGCAAGAAAACGCGTGTTTGGTTAGGCACTTTTGATACGGCCGAGGAGGCGGCGCGTGCCTACGACGCCGCCGCTAGGGAGTTCCGTGGCGCCAAGGCTAAGACCAATTTTCCAACCCCGTCCGACCTCGCGAATAATAACTCCAGCCATAGCCCGAGTCAGAGCAGCACGCTGGAGTCGTCTTCGTCTCCGTCGCCACCGccgcctcctcctcctccgtTGGAACTGTCCCTTGCGACACTCTCTCCCGGCGGCGCGTTGGGGTTCCCGGTGATTCCTGTGGCTCGGCCGATTGTGTTTTTTGACGCGTTCGTTAGGGCGGATAACATGGCTGCTCTTAATCGCCGCCGTGGCGAGATGTGCGGGTTTGATCAGACGGTGGGGGATTTTCATCATTCCGTCAGCGGCGGCGGAGGGGCTCAGAGTGACTCCGATTCGTCCTCCGTCGTAGATTATGAGCACGCTCCTCCGCGTCGGATGCTCTTAGATCTTGACCTCAATGTTCCTCCTCCGCCGGAGgtGATCCATTACAAAAGGCGTTTCTGA 672 0.5744 MAPRDRPTSLPGSDPAHTVKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDAAAREFRGAKAKTNFPTPSDLANNNSSHSPSQSSTLESSSSPSPPPPPPPPLELSLATLSPGGALGFPVIPVARPIVFFDAFVRADNMAALNRRRGEMCGFDQTVGDFHHSVSGGGGAQSDSDSSSVVDYEHAPPRRMLLDLDLNVPPPPEVIHYKRRF 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g2831 223 Pfam AP2 domain 23 72 IPR001471 GO:0003700|GO:0006355
Sto4g2831 223 ProSiteProfiles AP2/ERF domain profile. 23 80 IPR001471 GO:0003700|GO:0006355
Sto4g2831 223 MobiDBLite consensus disorder prediction 74 121 - -
Sto4g2831 223 SMART rav1_2 23 86 IPR001471 GO:0003700|GO:0006355
Sto4g2831 223 SUPERFAMILY DNA-binding domain 23 81 IPR016177 GO:0003677
Sto4g2831 223 Gene3D AP2/ERF domain 22 81 IPR036955 GO:0003700|GO:0006355
Sto4g2831 223 CDD AP2 23 80 IPR001471 GO:0003700|GO:0006355
Sto4g2831 223 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 203 - -
Sto4g2831 223 PANTHER ERF FAMILY PROTEIN 1 203 - -
Sto4g2831 223 MobiDBLite consensus disorder prediction 104 119 - -
Sto4g2831 223 MobiDBLite consensus disorder prediction 1 22 - -
Sto4g2831 223 PRINTS Ethylene responsive element binding protein signature 24 35 IPR001471 GO:0003700|GO:0006355
Sto4g2831 223 PRINTS Ethylene responsive element binding protein signature 46 62 IPR001471 GO:0003700|GO:0006355
Sto4g2831 223 MobiDBLite consensus disorder prediction 80 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g2831 Sto-Chr4 29105253 29106425 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g2831 14 144 AP2-EREBP Transcription Factor Family AT3G15210 61.224 6.10e-48 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto4g2831 AP2 2.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g2831 K09286 - gmx:100500601 199.904
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto7g0229 7 1637458 1639289 Sto4g2831 4 29105253 29106425 ECH
Sto12g0667 12 4219122 4219784 Sto4g2831 4 29105253 29106425 ECH
Sto4g2831 4 29105253 29106425 Sto13g2193 13 28820348 28823362 ECH
Sto4g2831 4 29105253 29106425 Sto4g2831 4 29105253 29106425 ECH