Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g2828 ATGGAAAGCTACTACCAGTTTGACAACAGTGACTCTCATTTGCCTCCTGGCTTTCGCTTCCACCCCACAGACGAAGAGCTCATAACGTACTACCTTCTCAAGAAGGTTCTTGACAATAGCTTCACAGGTAGAGCCATTGCTGAAGTTGACCTGAACAAGTGTGAGCCATGGGAGCTCCCAGGGAAAGCCAAGATGGGGGAGAAGGAGTGGTACTTCTTCAGCTTACGAGATAGGAAGTACCCAACTGGGCTACGAACCAATAGGGCAACAGAAGCAGGATACTGGAAGGCCACTGGGAAAGACAGGGAGATCTATAGCTCCAAGTCTTGCTGCCTTGTGGGGATGAAGAAGACACTTGTTTTCTACAGAGGCAGAGCTCCCAAAGGCGAGAAAAGTAACTGGGTCATGCACGAGTATCGCCTTGAAGGCAAATTTGCTTACCATTACCTCTCCAGAACCTCCAAGGACGAGTGGGTCATATCCCGTGTGTTCCAGAAGAACATCGCCGGCACCGGCGGATCCGCCACCGTGTCCTCCTCCGGAAACGGCTCCAAGAAGACACGTGGCGGAATCAGCTGTGCTTCTAACTTGAGCCTGTATACTGATCAGCCTAGTTCTCCCTCTTCCGTCTACCTTCCGCCTCTCCTCGACCCCTCCCCCGCGGCGGCGTACTCCGGCGCCGCCGCCAGCAGCACCGCCGGCGTCAACGACCGTGACAGCTGCTCTAATGCTTACGACAGCAATACGACCGTACGAGAGCACGTGTCCTGTTTCTCCACAATCTCTGGCACCAATAATAACAACTACAGTTTCGCCAATGGAGGGTTTGATTTTGCTGCAGCCGCGTCCACGGGTGTTACGGTGGACCCCTTCGCGCGCTTCCAAAGAAACGGCGCCGTTTCGGCCTTCCCGAGTCTGAGGTCTCTCCAGGACAACCTCCAGCTGCCGTTTTTCTTTCCCCCGCCGCCGCAGCAGCCGCCCTTCCACGGCGTTCCGGTTGACGTAAACGGCTGCGGAGCCCTGGGGAACTGGGCGCCGGCGCCGGCGGAGGAGCAGCGTGCAGCAGACGGTGTCTCCGGCATGGCGGTGATCGGTGGCTCCGACCTTGATTGCATGTGGGGCTTCTAG 1128 0.5674 MESYYQFDNSDSHLPPGFRFHPTDEELITYYLLKKVLDNSFTGRAIAEVDLNKCEPWELPGKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKSCCLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYHYLSRTSKDEWVISRVFQKNIAGTGGSATVSSSGNGSKKTRGGISCASNLSLYTDQPSSPSSVYLPPLLDPSPAAAYSGAAASSTAGVNDRDSCSNAYDSNTTVREHVSCFSTISGTNNNNYSFANGGFDFAAAASTGVTVDPFARFQRNGAVSAFPSLRSLQDNLQLPFFFPPPPQQPPFHGVPVDVNGCGALGNWAPAPAEEQRAADGVSGMAVIGGSDLDCMWGF 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g2828 375 ProSiteProfiles NAC domain profile. 14 166 IPR003441 GO:0003677|GO:0006355
Sto4g2828 375 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-LIKE 5 372 - -
Sto4g2828 375 Gene3D NAC domain 23 169 IPR036093 GO:0003677|GO:0006355
Sto4g2828 375 SUPERFAMILY NAC domain 12 166 IPR036093 GO:0003677|GO:0006355
Sto4g2828 375 Pfam No apical meristem (NAM) protein 15 141 IPR003441 GO:0003677|GO:0006355
Sto4g2828 375 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g2828 Sto-Chr4 29079371 29080872 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g2828 4 375 NAC Transcription Factor Family AT5G53950 55.224 1.70e-121 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sto4g2828 NAM 6.7e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g2828 - - cam:101501114 436.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto4g2828 4 29079371 29080872 Sto4g2828 4 29079371 29080872 ECH