Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g2819 ATGGGTAGGCCACCCAGCAATGGAGGCCCCGCCTTTCGCTTTACTCAGGCTGAGGTTGCAGAAATGGAAGCAATTCTGCAAGAGCACAATAATGCTATGCCAGCGCGTGATGTTCTCACAGCTCTTGCAGAGAAGTTCAGTGAATCTCCTGATCGTAAAGGGAAGATTACTGTGCAGATGAAGCAAGTTTGGAATTGGTTTCAAAATAAGCGGTATGCTATAAGGGCAAAATCGAGTAAGGCTCCTGGAAAGTTAAGCATCACTCCTATGCCTCGTGATGAATCAACCCCAGTTAGAAATATGCCTCAACCAATGGCTACTCCAATGCCTCCTGCTTCAGACTCAGTTCCAACAACAGGAAAAGGTGCTCCTGAAAATTCAGCAATGGAGTTTGAAGCTAAATCTGGAAGAGATGGAGCATGGTATGATGTTGCAAACTTTCTGTCCCACAGACATTTGGAAACCAGTGATCCGGAAGTGCTGGTCCGATTTGCTGGTTTTGGACCCGAGGAAGATGAGTGGGTTAATGTCCGAAGGAATGTCCGGCCACGCTCTCTTCCATGTGAATCATCAGAATGTGTAGCAGTGCTTCCTGGAGATCTCATACTCTGTTTTCAGGAAGGTAAAGAACAGGCTCTTTACTTCGATGCTCATGTCCTTGATGCTCAAAGACGGAGGCATGATGTAAGAGGCTGTCGTTGTAGATTTTTGGTTCGTTATGATCATGATCAATCAGAGGAAATTGTTCCCCTCAGGAAGGTTTGTCGTAGGCCAGAAACTGATTACAGGTTACAGCAACTTCATGCTATGAATGAAGCAACACCTGTGGATCAGCAGAAGACCAGCATGGACTTAACGCCTGTCCATGTTATCAAGGTTCCGAGTTCAGCTGAAACAGTGCCAAAGCAGCAGAGTGTGAACACTGCCATAGTGCCGCCAGTTCCGCAAGCGAATGTTTCTCTTGTCCCTCAAACTATGAATATTGATCCGAAAAAGGTCGAAGCAACCAGTGACATGAAAGGAGGAAACACCATTGTTCGCCCGGGTGGTACAGTTTTCCCCAGCAACGTCATTACGAGCGGTGTTCCAGTCGTTTCAAGTCAGAACATGGATGAAGGAAAATGA 1125 0.4649 MGRPPSNGGPAFRFTQAEVAEMEAILQEHNNAMPARDVLTALAEKFSESPDRKGKITVQMKQVWNWFQNKRYAIRAKSSKAPGKLSITPMPRDESTPVRNMPQPMATPMPPASDSVPTTGKGAPENSAMEFEAKSGRDGAWYDVANFLSHRHLETSDPEVLVRFAGFGPEEDEWVNVRRNVRPRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSEEIVPLRKVCRRPETDYRLQQLHAMNEATPVDQQKTSMDLTPVHVIKVPSSAETVPKQQSVNTAIVPPVPQANVSLVPQTMNIDPKKVEATSDMKGGNTIVRPGGTVFPSNVITSGVPVVSSQNMDEGK 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g2819 374 Pfam SAWADEE domain 128 255 IPR032001 GO:0003682
Sto4g2819 374 CDD homeodomain 13 75 IPR001356 GO:0003677
Sto4g2819 374 Gene3D - 188 260 - -
Sto4g2819 374 PANTHER PROTEIN SAWADEE HOMEODOMAIN HOMOLOG 2 1 338 - -
Sto4g2819 374 SMART HOX_1 7 81 IPR001356 GO:0003677
Sto4g2819 374 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677
Sto4g2819 374 Gene3D - 10 84 - -
Sto4g2819 374 SUPERFAMILY Homeodomain-like 4 77 IPR009057 -
Sto4g2819 374 MobiDBLite consensus disorder prediction 79 123 - -
Sto4g2819 374 Gene3D - 126 187 - -
Sto4g2819 374 PANTHER PROTEIN SAWADEE HOMEODOMAIN HOMOLOG 2 1 338 IPR039276 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g2819 Sto-Chr4 28994239 29002845 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Sto4g2819 SAWADEE 4.4e-40 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g2819 - - aip:107630217 551.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto4g2819 4 28994239 29002845 Sto4g2819 4 28994239 29002845 ECH