Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g2794 ATGTCGCATTCTGGGAAGGGTATTTCCGAGCTAGGGTTTGATGCTCTCAACGATCGATTCCGCGACTCCCTGAGCTGCGAGGCTAACAAGCCGGATTTTCGAGAACTCGATTTAGGCTCGCCGGTTTCGCCATTGCGGACTCGTCACAGTAGTGCACCTGCCACTAGTGGACTCACCACCACCAGTAGTAGTTCAAGTTCATCCGGATCGGTCTCTGGACGGAACGGCTACAACACCGTCCCCAAACGATCCGATTCCGATCCGAACAATCATTCCGGTGAGCTCTCCGGCTCCAGCGAGAACAGTCCCACCGCCGCGGAGAGCCTACGATCTGCGGGGAATGCCAGGAATTTCAAATCACCACAAGCAAGATCAGATTCCGCCACCACTCAACCATTGATTTACTCGGGTCAAAGCTCCTCCGTGAATTCACCACCGCCGAATTTTCTTCCCACAGGCAATATCTGTCCGTCCGGCAAGATTCCGAAGACTGCTCCTGTGATCAATCGGAGCTCGAGGTCTGACGTTTTGGGCACCGGTACCGGGAATTACGGCCACGGAAGCATAATGCGGGGCGGCGTGGCTTCCAAAGGCGCCCCTGGAGATACGATAGGTGTGGCCAATGCAAGGATAAGCAGTGGTGGTGCCGTCGGTGGCACCGACCCGATTAAGCGAGGGTCATTGAGTGTGGATCCGGAAGAGGTGAAGAGAGCAGGGAACGAGCAGTACAAGAAGGGTCACTTCACGGAGGCGCTGAGTCTATACGATCGAGCAATTGCATTATCCCCTGCTAACGCAGCCTACCGGAGCAATCGTGCAGCCGCATTGACGGGTTTGCGACGGTTGGGTGAGGCAGTGAGGGAATGTGAGGAGGCTGTGAGGTTGGATCCTAATTATGGAAGGGCACATCATCGTTTGGCTTCTctttttctccgCTCTGTTGGCAATGCAAAGATTCTTATTGTACTTGTTGATTTGGATTTGTTAGTGGATTGTCCTCCACCTCTAGTTGTGGATAAGGAATTTAAATGGTTATCCGTTATTTGCATTTGTCGTGACAGGTTAGGACAAGTTGAGAATGCCAGGAAGCACCTCTTCTGTCCGGGATTGCCGCCAGATCCTTCGGAATTGCAGAAATTGCAATCAGTGGAGAAGCATATCAGCAAATGTACAGATGTCCGGAGGATAGCAGATTGGAAAAGTGTACTCAGGGAAGTAGATGCTGCTGTTGCTGCCGGAGCGGACTCTTCTCCTCAACTATTTATGTGTAGAGCTGAAGCCTTCTTGAAGCTCCACCAAATTGATGACGCAGAATCAAGTCTGTCAAATTCCAAATTGGAACAGCATACTAACTCCTCTTCACAGTCAAGATTTTTTGGGTTCCTTTCTGAAGCTTATTCCTTCTTTGTCAGAGCTCAGATTGAGATGGCTAGGGGAAGGTTTGAGAATGCAGTTACAGCTGCTGAGAAAGCGGGTCAGATTGATCCCCGAAACATTGAGGTAGCtgttttgataaaaaatgtaaagaTGGTGGCAAGAGCTCGAGCGCAAGGCAATGATCTTTTCAAATCCGAACGGTTCACTGAAGCTTGCTCAGCATATGGGGAAGGTTTGAGGCTGGATCCTTCGAACTCTATTCTCTACTGCAATAGAGCAGCTTGTTGGTTTAAGCTTGGGCACTGGGAACGATCAATTGAAGATTGCAATCAAGCGTTACATATCCAACCAAATTACACAAAAGCCCTTCTTCGGAGGGCTGCATCAAACAGCAAGCTTGAACAGTGGGAAGAAGCAGTCAAAGATTATGAGGTCTTGCGGAGGGAGCTTCCAGATGACAATGAAGTAGCTGAAGCTCTGTTTCATGCACAAGTCGCATTAAAGAAATCTCGTGGAGAAGAAGTGCAGAATTTGAAATTTGGTGGTGAAGTGGAAGAAGTATCAGGTCTTGAGGAATTTAGAGCTGCAATATCATTACCAGGTGTTTCTGTTGTCCATTTTGAAATTGCATCTAACCCACAATGCAAGCAAATTTCACCATTTGTGGGCACACTATGTGGTCGCTATCCCTCTATTAACTTCCTCAAGgTGGATATTCAAGAATGCCCAACAGTTGCAACTTCTGAGAGCGTTAGGATTGTACCAACATTCAAGATCTACAAGAATGGCAATCGTGTGAAGGAAATTGTATGTCCTAGTCGAGACATGTTGGAACACTCTGTGAAGCGATACAGCTTTTAA 2238 0.4781 MSHSGKGISELGFDALNDRFRDSLSCEANKPDFRELDLGSPVSPLRTRHSSAPATSGLTTTSSSSSSSGSVSGRNGYNTVPKRSDSDPNNHSGELSGSSENSPTAAESLRSAGNARNFKSPQARSDSATTQPLIYSGQSSSVNSPPPNFLPTGNICPSGKIPKTAPVINRSSRSDVLGTGTGNYGHGSIMRGGVASKGAPGDTIGVANARISSGGAVGGTDPIKRGSLSVDPEEVKRAGNEQYKKGHFTEALSLYDRAIALSPANAAYRSNRAAALTGLRRLGEAVRECEEAVRLDPNYGRAHHRLASLFLRSVGNAKILIVLVDLDLLVDCPPPLVVDKEFKWLSVICICRDRLGQVENARKHLFCPGLPPDPSELQKLQSVEKHISKCTDVRRIADWKSVLREVDAAVAAGADSSPQLFMCRAEAFLKLHQIDDAESSLSNSKLEQHTNSSSQSRFFGFLSEAYSFFVRAQIEMARGRFENAVTAAEKAGQIDPRNIEVAVLIKNVKMVARARAQGNDLFKSERFTEACSAYGEGLRLDPSNSILYCNRAACWFKLGHWERSIEDCNQALHIQPNYTKALLRRAASNSKLEQWEEAVKDYEVLRRELPDDNEVAEALFHAQVALKKSRGEEVQNLKFGGEVEEVSGLEEFRAAISLPGVSVVHFEIASNPQCKQISPFVGTLCGRYPSINFLKVDIQECPTVATSESVRIVPTFKIYKNGNRVKEIVCPSRDMLEHSVKRYSF 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g2794 745 ProSiteProfiles TPR repeat profile. 232 265 IPR019734 GO:0005515
Sto4g2794 745 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN TTL1 14 743 - -
Sto4g2794 745 SMART tpr_5 545 578 IPR019734 GO:0005515
Sto4g2794 745 SMART tpr_5 465 498 IPR019734 GO:0005515
Sto4g2794 745 SMART tpr_5 511 544 IPR019734 GO:0005515
Sto4g2794 745 SMART tpr_5 579 612 IPR019734 GO:0005515
Sto4g2794 745 SMART tpr_5 232 265 IPR019734 GO:0005515
Sto4g2794 745 SMART tpr_5 418 451 IPR019734 GO:0005515
Sto4g2794 745 SMART tpr_5 266 299 IPR019734 GO:0005515
Sto4g2794 745 Pfam TPR repeat 239 276 - -
Sto4g2794 745 Coils Coil 585 605 - -
Sto4g2794 745 ProSiteProfiles TPR repeat profile. 465 498 IPR019734 GO:0005515
Sto4g2794 745 MobiDBLite consensus disorder prediction 44 149 - -
Sto4g2794 745 ProSiteProfiles TPR repeat profile. 545 578 IPR019734 GO:0005515
Sto4g2794 745 Gene3D Tetratricopeptide repeat domain 230 318 IPR011990 GO:0005515
Sto4g2794 745 Pfam Thioredoxin 650 738 IPR013766 -
Sto4g2794 745 MobiDBLite consensus disorder prediction 27 174 - -
Sto4g2794 745 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 14 743 IPR044534 -
Sto4g2794 745 Gene3D Glutaredoxin 637 744 - -
Sto4g2794 745 SUPERFAMILY TPR-like 233 309 IPR011990 GO:0005515
Sto4g2794 745 CDD TRX_family 650 741 - -
Sto4g2794 745 Pfam Tetratricopeptide repeat 547 578 IPR001440 GO:0005515
Sto4g2794 745 Gene3D Tetratricopeptide repeat domain 349 631 IPR011990 GO:0005515
Sto4g2794 745 SUPERFAMILY Thioredoxin-like 548 743 IPR036249 -
Sto4g2794 745 SUPERFAMILY TPR-like 419 603 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g2794 Sto-Chr4 28792558 28795827 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g2794 510 650 U-box Gene Family AT3G07370 28.249 1.86e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g2794 - - jre:109012328 991.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto7g0181 7 1351357 1354319 Sto4g2794 4 28792558 28795827 CCT
Sto4g2794 4 28792558 28795827 Sto7g0467 7 3431466 3434500 CCT
Sto4g2794 4 28792558 28795827 Sto4g2794 4 28792558 28795827 ECH