Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g2780 atgtCGGGAGTTGGACCACTTACTCAGGATTGGGAGCCCGTTGTGATCCGGAAGAAGGCACCAACGGCGGCGGCCAAGAAGGATGAGAAAGCTGTCAACGCCGCTCGTCGCGCCGGCGCCGATATCGAAACCGTGAAAAAATCAAATGCTGGGACCAATAAAGCTGCCTCTAGCGGCACTTCTTTGAACACAAGGAAGCTTGATGAAGAAACTGAGAATCTTCATCATGACCGAGTACCAACTGAATTGAAGAAAGCAATCATGCAGGCTAGGATGGAGAAAAAGCTTACTCAGGCTCAACTTGCTCAGATTATAAATGAAAAGCCTCAAGTTATACAGGAGTATGAATCAGGTAAAGCCATTCCAAATCAACAAATATTGGGAAAATTGGAGAGAGCCCTGGGTGCGAAACTGCgtggaaagaaatga 429 0.4569 MSGVGPLTQDWEPVVIRKKAPTAAAKKDEKAVNAARRAGADIETVKKSNAGTNKAASSGTSLNTRKLDEETENLHHDRVPTELKKAIMQARMEKKLTQAQLAQIINEKPQVIQEYESGKAIPNQQILGKLERALGAKLRGKK 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g2780 142 CDD HTH_XRE 85 135 IPR001387 -
Sto4g2780 142 PANTHER ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 1 142 - -
Sto4g2780 142 MobiDBLite consensus disorder prediction 65 80 - -
Sto4g2780 142 MobiDBLite consensus disorder prediction 27 43 - -
Sto4g2780 142 MobiDBLite consensus disorder prediction 27 80 - -
Sto4g2780 142 MobiDBLite consensus disorder prediction 46 64 - -
Sto4g2780 142 Pfam Helix-turn-helix 87 137 IPR001387 -
Sto4g2780 142 Gene3D - 71 142 IPR010982 GO:0003677
Sto4g2780 142 Coils Coil 87 107 - -
Sto4g2780 142 PANTHER MULTIPROTEIN BRIDGING FACTOR 1B 1 142 - -
Sto4g2780 142 SMART mbf_short4 86 141 IPR001387 -
Sto4g2780 142 SUPERFAMILY lambda repressor-like DNA-binding domains 80 138 IPR010982 GO:0003677
Sto4g2780 142 Pfam Multiprotein bridging factor 1 9 79 IPR013729 -
Sto4g2780 142 ProSiteProfiles Cro/C1-type HTH domain profile. 87 141 IPR001387 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g2780 Sto-Chr4 28697517 28700035 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MBF1 Sto4g2780 MBF1 3.6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g2780 K03627 - rcu:8288271 257.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto4g2780 4 28697517 28700035 Sto4g2780 4 28697517 28700035 ECH