Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g2779 ATGTCTCTCAGAAACGTTTTCCGTTCTCGCAAATTCTCCAGATCCTTCAAGGAGGTTAGGGCAATTGACGAAGATGACCGCAACCACCTATTCGCCGACGCCGATTCCTCTGCCCACTCCCCGCCCTACGGCCTTGCATGGTCCACCATGCTGCCCGAGCTTCTCGGAGAGATAATACGCCGCGTTGACGCCACGGACCACCAGTGGCCCAACCGCCAAAACGTCGTCGCTTCCGCCTGCGTCTGCAAGAGGTGGAGGGAGGTCACGCAGGAGATCGTGCGCTCCCCTTCTCGCAACGGCGGCAAAATCACTTTTCCTTCTTGCCTCAAGCAGCCAGGACCACGTGAGTCACCTCACCAATGTATTATAAAGCGGGACAAGAAGACTTCAACATTTTACCTATATCTTGCCCTTACACCACCATCATTCACAGATAAAGGTAAGTTTCTCTTAGCAGCTAGGAGATATAGGCGTGGTGCCCATACTGAATATATAATATCACTTGATCCTGATGACTTATCCCAAGGAAGCAGTGCCTATGTTGGAAAGTTAAGCTCAGATTTTCTTGGCACCAACTTCACAATCTATGATTGCCAGCCACCACATAGTGGTGCAAAGCCATCAAACGGCAAGGCAAGCCGTCGTTTTACCTGCAAGCAGATAAGCCCCCAACTTCCTGCAGGTAACTTTGAGGTGGGGCAAGTGTCATACAAATTCAACCTTTTGAAATCAAGGGGGCCAAGGAGGATGGTGTGCTCAATGAAGTTCCCATATTCATCGACAGGAGAGAGTTCAGATAACAAATCTCTGGATGGCCATAAGATTAACGATGCAGAATATGCTGCCCCTGGATACTCAATCTTGAGAAACAAAGCTCCAAGGTGGCATGAGCACTTGCAATGCTGGTGCTTAAATTTCCACGGTCGTGTAACTGTAGCGTCAGTGAAGAATTTTCAGCTGGCTGCTACAGTGGACCAAAGCCAACCAGGAGGGAAGGGAGATGAGGAAACAGTTCTTCTTCAATTTGGAAAAGTGGGAGATGATATGTTCACCATGGATTACCGGAGGCCCTTATCTGCCTTTCAGGCCTTCGCCATTTGCCTCACTAGTTTTGGCACTAAACTGGCTTGTGAGTAA 1137 0.4916 MSLRNVFRSRKFSRSFKEVRAIDEDDRNHLFADADSSAHSPPYGLAWSTMLPELLGEIIRRVDATDHQWPNRQNVVASACVCKRWREVTQEIVRSPSRNGGKITFPSCLKQPGPRESPHQCIIKRDKKTSTFYLYLALTPPSFTDKGKFLLAARRYRRGAHTEYIISLDPDDLSQGSSAYVGKLSSDFLGTNFTIYDCQPPHSGAKPSNGKASRRFTCKQISPQLPAGNFEVGQVSYKFNLLKSRGPRRMVCSMKFPYSSTGESSDNKSLDGHKINDAEYAAPGYSILRNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLAATVDQSQPGGKGDEETVLLQFGKVGDDMFTMDYRRPLSAFQAFAICLTSFGTKLACE 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g2779 378 PANTHER TUBBY-RELATED 1 378 - -
Sto4g2779 378 ProSitePatterns Tub family signature 1. 306 319 IPR018066 -
Sto4g2779 378 Gene3D Tubby Protein; Chain A 104 378 IPR025659 -
Sto4g2779 378 ProSitePatterns Tub family signature 2. 363 378 IPR018066 -
Sto4g2779 378 PANTHER TUBBY-LIKE F-BOX PROTEIN 7 1 378 - -
Sto4g2779 378 Pfam F-box domain 52 93 IPR001810 GO:0005515
Sto4g2779 378 SUPERFAMILY Tubby C-terminal domain-like 100 378 IPR025659 -
Sto4g2779 378 Pfam Tub family 109 373 IPR000007 -
Sto4g2779 378 PRINTS Tubby superfamily signature 164 180 IPR000007 -
Sto4g2779 378 PRINTS Tubby superfamily signature 180 204 IPR000007 -
Sto4g2779 378 PRINTS Tubby superfamily signature 229 256 IPR000007 -
Sto4g2779 378 PRINTS Tubby superfamily signature 288 305 IPR000007 -
Sto4g2779 378 PRINTS Tubby superfamily signature 306 322 IPR000007 -
Sto4g2779 378 PRINTS Tubby superfamily signature 335 354 IPR000007 -
Sto4g2779 378 PRINTS Tubby superfamily signature 356 378 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g2779 Sto-Chr4 28691718 28694994 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g2779 1 378 TUB Transcription Factor Family AT1G53320 69.588 0.0 524
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Sto4g2779 Tub 4.7e-99 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g2779 K19600 - gmx:100808096 598.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto4g2779 4 28691718 28694994 Sto4g2779 4 28691718 28694994 ECH