Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g2757 ATGGCTTTGTTCTGTGCTTCAACTTCACTCACATTCCCTTCGTCTTCAGCTCTATCTTCCTTCACTTCTCGCAGCAATGGAAACCCCAAATCTCCATTTGTAGGCTTCCAAGTAGCCTTATCCAACCCTTCTATTCGGACCAATTTCCGTACCAATTCTAGGGGAACTTTTCAGGTCCGTTGCCAGGACCTCTCCGTCGTCCCCTTAGATCAACGCTGGATGTTCGAGGAATCCGAAGCTGATGGCCCTGACATTTGGAACAAGACATGGTATCCCAAAGCTGCAGATCATGTAAACACAGATAAAACATGGTACATTGTTGATGCAACAGACAAAATTCTCGGAAGACTTGCATCAACAATTGCTATTCATATCCGAGGAAAAAATTTGGCAACCTATACTCCTAGTGTGGACATGGGCGCATTTGTAATTGTGGTTAATGCAGAAAAAGTTGCTGTATCTGGAAAAAAGAGGACCCAAAAGGTTTATAGGAGGCATTCTGGCCGGCCTGGTGGTATGAAAGTAGAGACATTTGCCCAACTACAGCAGAGAATTCCAGAAAGGATTATTGAACATGCTGTTCGTGGCATGCTTCCAAAAGGGAGGCTTGGCAGACAACTGTTCAACCACCTGAAGGTTTATAAGGGTCCAGATCATCCGCATCAGGCCCAGAAGCCAGTTGAGTTGCCAATAAGGGACAAAAGAATACAATTGCAGAGATAG 723 0.4495 MALFCASTSLTFPSSSALSSFTSRSNGNPKSPFVGFQVALSNPSIRTNFRTNSRGTFQVRCQDLSVVPLDQRWMFEESEADGPDIWNKTWYPKAADHVNTDKTWYIVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAFVIVVNAEKVAVSGKKRTQKVYRRHSGRPGGMKVETFAQLQQRIPERIIEHAVRGMLPKGRLGRQLFNHLKVYKGPDHPHQAQKPVELPIRDKRIQLQR 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g2757 240 PANTHER RIBOSOMAL PROTEIN L13 54 240 IPR005822 GO:0003735|GO:0005840|GO:0006412
Sto4g2757 240 PANTHER 50S RIBOSOMAL PROTEIN L13, CHLOROPLASTIC-LIKE 54 240 - -
Sto4g2757 240 TIGRFAM rplM_bact: ribosomal protein uL13 98 229 IPR005823 GO:0003735|GO:0005840|GO:0006412
Sto4g2757 240 Gene3D Ribosomal protein L13 93 236 IPR036899 GO:0003735|GO:0005840|GO:0006412
Sto4g2757 240 Hamap 50S ribosomal protein L13 [rplM]. 104 239 IPR005822 GO:0003735|GO:0005840|GO:0006412
Sto4g2757 240 Pfam Ribosomal protein L13 102 220 IPR005822 GO:0003735|GO:0005840|GO:0006412
Sto4g2757 240 SUPERFAMILY Ribosomal protein L13 98 232 IPR036899 GO:0003735|GO:0005840|GO:0006412
Sto4g2757 240 ProSitePatterns Ribosomal protein L13 signature. 194 216 IPR023563 GO:0003735|GO:0005840|GO:0006412
Sto4g2757 240 CDD Ribosomal_L13 104 217 IPR005822 GO:0003735|GO:0005840|GO:0006412
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g2757 106 239 Cytoplasmic Ribosomal Protein Gene Family AT3G07110 31.618 2.73e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g2757 K02871 - jre:109014818 378.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto4g2757 4 28522866 28525367 Sto4g2757 4 28522866 28525367 ECH