Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g2742 atggATTCCCAATTCCACGGCTTACCTCCCTTGAAGAGATTGAGACTCATCCAGCAGCAGCGAGAGCTACAGGATCAGCAGcaacaagaagaagaatatgAATGCTCTGTCGTTTCCTGTTCATCAACTTTACCAGCGAAGAAGCGTAAGGAATCGCGAGACTCAACCTTCTCTTCAAACGCTTATTCGTTACCAGCTAAGAAAAGGGTATGGGCTCTTCAACCTGATTTTGCTTCCGATCTTGCTCTTTCCCCCATTGACCTCAATGTCGAATACAAACCATCTTTTGAGGAACAAAAAACAGAGGATCGTGATGAAATCATCCCAATACTATCTGAAAATCcccaaattgaaataaaaaatgacaatgatgatgatgatgatgatgggatTATATGTGATGTTTGTCAAAGCACAGATGGGGATCCATCGGATCCAATTGTGTTCTGTGATGGGTGTGATCTAATGGTTCACGCCTCATGCTATGGAAATCCGCTCGTAAAGGGCATTCCAGAAGGCGATTGGTTCTGTGAGAAATGCaaggcatcatcatcatctttggAAGAGAATGGGAAGGGTATGGTTTCTTGTTGTCTGTGTCCTGTGAATGAAGGGGCAATGAAGCCCACAAGGGATGGAAGGTGGGCCCACATTGTGTGTGCACTTTTGGTGCCTGAAGTGTTTTTTAGGGATCCAGAAGGAAGAGATGGGATTGATTGTTCTAAGGTTCCGAAGAAGAGATGGCTGGAGAAGTGTTACATTTGTAAATGTTCAAATGGCTGTGCCATTGTGTGTTCTGAGATCAAGTGTCCTCTGGCGTTTCACGTTACTTGTGGGTTGAAGGAGGATTTAAGCATTGAGTATcaagaagggaagaagaatgctACTATTGTGGCTGGTTTCTGCAACACCCACACTCAGCTATGGAAAAagCAACAACAATCAGGGAAATACAAAATCGTTGCTAGAGAAGACAAAAAGTAG 984 0.3913 MDSQFHGLPPLKRLRLIQQQRELQDQQQQEEEYECSVVSCSSTLPAKKRKESRDSTFSSNAYSLPAKKRVWALQPDFASDLALSPIDLNVEYKPSFEEQKTEDRDEIIPILSENPQIEIKNDNDDDDDDGIICDVCQSTDGDPSDPIVFCDGCDLMVHASCYGNPLVKGIPEGDWFCEKCKASSSSLEENGKGMVSCCLCPVNEGAMKPTRDGRWAHIVCALLVPEVFFRDPEGRDGIDCSKVPKKRWLEKCYICKCSNGCAIVCSEIKCPLAFHVTCGLKEDLSIEYQEGKKNATIVAGFCNTHTQLWKKQQQSGKYKIVAREDKK 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g2742 327 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 191 308 IPR013083 -
Sto4g2742 327 Pfam PHD-finger 132 182 IPR019787 -
Sto4g2742 327 SUPERFAMILY FYVE/PHD zinc finger 122 185 IPR011011 -
Sto4g2742 327 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 187 IPR013083 -
Sto4g2742 327 Coils Coil 16 36 - -
Sto4g2742 327 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 121 325 - -
Sto4g2742 327 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 2 101 - -
Sto4g2742 327 ProSitePatterns Zinc finger PHD-type signature. 133 180 IPR019786 -
Sto4g2742 327 SMART PHD_3 251 306 IPR001965 -
Sto4g2742 327 SMART PHD_3 132 181 IPR001965 -
Sto4g2742 327 PANTHER PHD FINGER PROTEINS 2 101 - -
Sto4g2742 327 PANTHER PHD FINGER PROTEINS 121 325 - -
Sto4g2742 327 CDD PHD_BRPF_JADE_like 133 180 - -
Sto4g2742 327 ProSiteProfiles Extended PHD (ePHD) domain profile. 194 306 IPR034732 -
Sto4g2742 327 Pfam PHD-zinc-finger like domain 196 305 - -
Sto4g2742 327 ProSiteProfiles Zinc finger PHD-type profile. 130 183 IPR019787 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g2742 1 327 C2H2 Transcription Factor Family AT3G14740 56.534 6.81e-123 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Sto4g2742 zf-HC5HC2H_2 6.5e-28 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g2742 K11380 - jre:108985327 406.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto4g2742 4 28379980 28381710 Sto4g2742 4 28379980 28381710 ECH