Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g2701 ATGTACAGAAGGCCACCAAGGATGGAAGCTTGTGTCACGGGAAAAGTATCGAATCGTAACCATATAAAGAGCACGAATAGAACGGATGATTTGAAAGATATTCCAAGTAAAATGAAGAAAGTTGATTTGAAAGATCAAGAATGGATCAATAAGATTCCAAAGTGTCCAGTATACTGCCCATCACAAGAGGAGTTTGAGGATCCTTTGGTTTATTTGCACAAGATTGCTCCTGAGGCACATAAATATGGAATATGCAAAATTGTTTCTCCTATAAATGCCACAATTCCATCTGCCATTGTCTTAATGAAAGAGATAAAAGACTTCAAGTTTGAAACTATTGTACAGCCCCTTGGGTTTTCTGAAAGGAATGACAATGATGAAATAACCTTTTCTTTGAGAGGCAGAAAATACACATACCGTGAATTTGAGACTCTGGCAAACAAGGCCTTTCGTAGTCGATTTTACAGTTCTGGAGGTCTTCCTTCTTCATATGTGGAAAAGTTGTTCTGGTATGAGATGGAGCATGGAGAGATGGAAACAGTTGAGTATGGAGTCAATGTTGAAGGAAGTGCTTTTTCATGTGATCCTCATGACAACCTTGGCAAAAGCAAATGGAATCTCAAGAACTTCTCACGGCTGCAAAATTCCATATTGAGATTGATTGACAGAGAAATACCAGGAATAACTGATCCTATGCTTTACATTGGAATGCTATTCAGCATGTTTGCATGGCATGTAGAGGATCACTATCTGTACAGCATCAACTATCATCACTCAGGAGCAAACAAGACTTGGTATGGCGTTCCCAGCCATGCAGCTTCTCGATTCGAAAATGTTGTTTCAGATCACGTGTACCGCAAGGAGATTTTATCAGAAAAACATGGAGAGGATAGGGCCTTTGAACTTCTTGCTCACAAAACGACTATGTTTTCTCCGGCCGTTTTGCTCCAACATGATGTGCCAGTTTACAAGGCTGTGCAGAAGCCAGGGGAGTTTGTCATCACTTTTCCTAGAGCATATCATGCTGGATTCAGTCATGGTTTCAACTGTGGAGAAGCAGTGAACTTCGCCACAAGTAATTGGTTTCCACTAGGTGCTGAAGCTTCCAGGCGTTATTCACATCTTAGCATGATGCCTATTATTCCTTATGAGGAACTTCTTTGTAAAGAGGCAATGCTGATTCACAAGGCCTCAAAAGTCAGAGGCTTGAAGAACAAACCTGAAGATTTGGCATCCTACCATGCTACTAAGCTATCTTTCATGAATCTTATgagattttacaaaaatacccTTCTGAGACTCAGCAGTTCAAGGAAGTATTCACGCTCTTCTAATTCACTAGGCACTATGATATGCAGCCACTGCCACAGAGACTGTTATGTGGCTTACTTGCTGTGCAAGTACTGCGATTCTCATCCCATCTGTCTATTCCATGACAAGAGGGCTCAAACTTGCTCATGTGGTAAACAATATACAATTTTCAAGACAGATGACATGTTGGCGCTGGAAGATGTTGCAGCAAGTTTTGAGCAGGAAAAAGATATACTGTTGGAAGCAGAGGACACTGTTGAGCTCAATTTGGTAAAGAATAAGAAGATAGTGTTCAAGTTTAGTAGAAAGAGAGGACCTCCAACAGTGATAGAGTACAAGAGACCACAAATGAACTCTAAATTGCTAAGAACTGAACCAAATATGACTCTATCTTCTCCAACAGTAGCTGTACCTTCTACAACTTGA 1737 0.4013 MYRRPPRMEACVTGKVSNRNHIKSTNRTDDLKDIPSKMKKVDLKDQEWINKIPKCPVYCPSQEEFEDPLVYLHKIAPEAHKYGICKIVSPINATIPSAIVLMKEIKDFKFETIVQPLGFSERNDNDEITFSLRGRKYTYREFETLANKAFRSRFYSSGGLPSSYVEKLFWYEMEHGEMETVEYGVNVEGSAFSCDPHDNLGKSKWNLKNFSRLQNSILRLIDREIPGITDPMLYIGMLFSMFAWHVEDHYLYSINYHHSGANKTWYGVPSHAASRFENVVSDHVYRKEILSEKHGEDRAFELLAHKTTMFSPAVLLQHDVPVYKAVQKPGEFVITFPRAYHAGFSHGFNCGEAVNFATSNWFPLGAEASRRYSHLSMMPIIPYEELLCKEAMLIHKASKVRGLKNKPEDLASYHATKLSFMNLMRFYKNTLLRLSSSRKYSRSSNSLGTMICSHCHRDCYVAYLLCKYCDSHPICLFHDKRAQTCSCGKQYTIFKTDDMLALEDVAASFEQEKDILLEAEDTVELNLVKNKKIVFKFSRKRGPPTVIEYKRPQMNSKLLRTEPNMTLSSPTVAVPSTT 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g2701 578 ProSiteProfiles JmjC domain profile. 199 373 IPR003347 -
Sto4g2701 578 Pfam JmjC domain, hydroxylase 232 356 IPR003347 -
Sto4g2701 578 SMART cupin_9 202 373 IPR003347 -
Sto4g2701 578 SMART JmjN_1 54 95 IPR003349 -
Sto4g2701 578 Gene3D Cupin 55 417 - -
Sto4g2701 578 Pfam jmjN domain 56 88 IPR003349 -
Sto4g2701 578 SUPERFAMILY Clavaminate synthase-like 130 390 - -
Sto4g2701 578 ProSiteProfiles JmjN domain profile. 55 96 IPR003349 -
Sto4g2701 578 PANTHER TRANSCRIPTION FACTOR JUMONJI FAMILY PROTEIN 27 519 - -
Sto4g2701 578 PANTHER LYSINE-SPECIFIC DEMETHYLASE 27 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g2701 Sto-Chr4 28099217 28103707 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g2701 52 516 JUMONJI Transcription Factor Family AT2G34880 32.143 4.84e-64 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Sto4g2701 JmjC 2.8e-42 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g2701 - - gmx:100809650 711.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto4g2701 4 28099217 28103707 Sto4g2701 4 28099217 28103707 ECH