Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g2674 ATGGCTGCGGTTGCTGAGATTTCCGTCGATGCAACGGCTGCTAACAAATTGGACTCAAAGCCCAAGTCCGAATCCGAATTCAATGTGCAGAAGCTCGTTGATATGTTCACAAAGTTGAATCCTTTGGCCAAGGAGTTTTTCCCTTCAAAGTACTCTTATAATGATCATCTTCAACAGAGCTATCATCTGCTCTCGGCTAATGGTTTTCTGGTCAACAACAAGACGCCAGCTGATGATAATTACCCAAACAACCGAAGGAGAAGAACTAATTATAATCAGGGGAGGAGAAGGTCAAATGGAAGAGTGCACAAGGCTCAGAGAGAAGATAGCATTAGAAGAACAGTATACGTTTCTGACATAGATCAGCATGTTACGGAGGAACGGCTTGCTGCCTTATTTAGCAGTTGTGGACAAGTTATTGATTGCCGAATTTGTGGTGATCCACATTCAATTCTCCGTTTTGCGTTTGTGGAGTTTGCTGATGAGCATGGTGCAAAAGCAGCTTTAAACCTTGGGGGCACCGTGCTTGGATTCTATCCAGTCAGGGTTCTTCCTTCAAAAACTGCTATCCTTCCTGTGAATCCTACATTCCTTCCTAGGTCAGACGATGAGCGGGAAATGTGTAGCAGGACTGTGTATTGTACGAATATTGATAAAAAGATCTCTCAAGCTGAAGTGAAGAATTTCTTTGAATCAGCTTGTGGCGAGGTTACCCGCTTGAGGCTTTTAGGAGATCACGTGCATTCAACACGAATTGCTTTTGTGGAGTTCGCAATGGCAGAAAGTGCCATTATGGCGCTAAGTTGTAGTGGGATGCCGTTGGGAAGCCAGCCTATCAGGGTGAGTCCTTCAAAGACACCTGTGAGGCCAAGGATCGCTCGTCCAACATCACATTAA 897 0.4482 MAAVAEISVDATAANKLDSKPKSESEFNVQKLVDMFTKLNPLAKEFFPSKYSYNDHLQQSYHLLSANGFLVNNKTPADDNYPNNRRRRTNYNQGRRRSNGRVHKAQREDSIRRTVYVSDIDQHVTEERLAALFSSCGQVIDCRICGDPHSILRFAFVEFADEHGAKAALNLGGTVLGFYPVRVLPSKTAILPVNPTFLPRSDDEREMCSRTVYCTNIDKKISQAEVKNFFESACGEVTRLRLLGDHVHSTRIAFVEFAMAESAIMALSCSGMPLGSQPIRVSPSKTPVRPRIARPTSH 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g2674 298 MobiDBLite consensus disorder prediction 74 106 - -
Sto4g2674 298 SUPERFAMILY RNA-binding domain, RBD 76 189 IPR035979 GO:0003676
Sto4g2674 298 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 298 - -
Sto4g2674 298 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 177 IPR000504 GO:0003723
Sto4g2674 298 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 212 279 IPR000504 GO:0003723
Sto4g2674 298 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 210 286 IPR000504 GO:0003723
Sto4g2674 298 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 188 IPR000504 GO:0003723
Sto4g2674 298 SMART rrm1_1 114 184 IPR000504 GO:0003723
Sto4g2674 298 SMART rrm1_1 211 282 IPR000504 GO:0003723
Sto4g2674 298 CDD RRM1_CID8_like 111 190 IPR034823 -
Sto4g2674 298 MobiDBLite consensus disorder prediction 278 298 - -
Sto4g2674 298 Gene3D - 198 291 IPR012677 -
Sto4g2674 298 Gene3D - 71 189 IPR012677 -
Sto4g2674 298 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 9 1 298 - -
Sto4g2674 298 Pfam Ataxin-2 C-terminal region 35 49 IPR009818 -
Sto4g2674 298 CDD RRM2_CID8_like 206 287 IPR034825 -
Sto4g2674 298 SUPERFAMILY RNA-binding domain, RBD 200 291 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g2674 Sto-Chr4 27887375 27891282 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g2674 110 267 Eukaryotic Initiation Factors Gene Family AT1G34140 26.087 4.46e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g2674 - - gmx:100818291 482.641