Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g2643 ATGGGGGGGATTTGCTCAAAAAGCAAGAATAAAGTTGATGAGTATGAGAAAGAACAAGAcgatgagaaagaaaaagaattaagcAAGTCATCAGTACAACTGGTTGCTCCAGTTATCACAACTGCAGAGTTTGGTGGTGTCAATGACACTGATGGTTCAGTGAACCGAGTGCTTAAGaaatattcacatgcaaattttGGATCATCTCTTGATGCACCATTGGAGGATAAAAATAACCAGAAGGTAGTTGATGGAAAATTGATAAAAGGCCAACATCAGAGATGTGTAACATTAGATGCTGGTGTTGCTGGGGATGGAAAGCCATTGATGTCTCGAGTACTTAGCATGACACGAAATGCAGAGGGAGAACATTTTGCTGCGGGATGGCCATCATGGTTATCTTCAGTTGCAGGAGATGCCATCAAAGGGTGGGTGCCTCGACGGCTAGACTCTTTCGAGAAGTTAGGCCAAGTTGGACAAGGTGCTTATAGCACTGTACATAAGGCTCGCGACCTTCAAACTGGTAAAGTTGTGGCATTGAAGAAAGTGCGGTTTTCAAATTCAGATCCAGAAAGTGTCCGTTTTATGGCTAGGGAAATCTACATTTTGCGTCAACTCAACCATCCAAATGTCATGAAGCTTGAGGGTATTATCACATCAAGGACCTCTAGCAGTTTGTATCTTGTTTTTGAGTACATGGATCATGATCTAGCTGGACTAGAAGCAGTACTTGGTTCAAAGTTCACAGAACCTCAGATTAAATGTTATATGCAGCAATTGCTTCGTGGGCTTGAACATTGCCATAGTCGTGGTGTGCTGCACCGTGACATCAAGGGTTCAAATCTGCTAATTGACGGCAATGGAAATCTTAAGATTTCAGATTTTGGTCTCTCAACTATTTACAACCCTGATAAAAAAGAGCCAATGACTAGCCGTGTTGTGACTTTGTGGTATAGACCGCCTGAGCTTTTGCTTGGTGCTACAGAGTATGGAGCTGCAATTGACTTGTGGAGTGCTGGTTGCATTCTAGCAGAAATGCTGGTTGGGAAGCCTATTATGCCGGGAAGAACAGAGGTGGAACAGATGCACAAGATTTTTAAGCTTTGTGGTTCTCCATCTGAAGAGTTTTGGCAGAGAACAAAATTGCCACATGCAACAAGTTTTAAACCTCAACACCGGTACAAACGCCGTGTTTCCGAGACATTTAGAGACTTTCCTCCTTCAGCCTTGGCTCTTCTTGAGAAACTCCTTGCGATAGAACCAGAAGATCGAGGATCAGCAACTTCTGCACTTCAGAGTGAGTTCTTCACAACAAATCCCCTACCTTGTGATCCTTCAACTTTACCAAAGTTACCTCCTAGCAAAGAGTTCGATGTCAAGCTTCGGAATGAGGAAGCAAGAAGGAAAAATGCTGAAGCTGTACCGAGACGTGAGACAGCGACCGTTGCAAGGGGTGCAAGAGATACCAAAGTACTCCCAACACCAAACTTCAATGCTCAGGGAAATATATCTGTACAGGCTAATCCGAATACTAAAACTTGCTGTGGTAAATATAACCCCTCTGAGGACGGTAGGTCCCATTTTAAGATTGAGCCTACCACAGTATCTGTACATGATGGCTATGGTCATTCTACTTCAGTGATGCACCCTGCTGCGGAGGTATCGGTATTGAATCATAGATCAGACTCTATTAGGAAGAATCCAGTGTTAAGGACACAGAGATCTAATGTAAACCAGAAAGCAGCAGATTTTGATAACTCTTCTCTTAACAAGGACAAAGACATGTCTGGTGGAGACCCTGGAACGGGCTATGTGCCGAAGAAAAACAGGATGCATCACTCTGGACCGTTGATGCCACCAGGGGGTAACATCGACGACATGCTCAGGGAGCACGAGAGATTAATGCAGGAGGCATTCCGTACTGTCAAGGACATGAACAATCATACACATCAAAATTGCCATTAA 1965 0.43 MGGICSKSKNKVDEYEKEQDDEKEKELSKSSVQLVAPVITTAEFGGVNDTDGSVNRVLKKYSHANFGSSLDAPLEDKNNQKVVDGKLIKGQHQRCVTLDAGVAGDGKPLMSRVLSMTRNAEGEHFAAGWPSWLSSVAGDAIKGWVPRRLDSFEKLGQVGQGAYSTVHKARDLQTGKVVALKKVRFSNSDPESVRFMAREIYILRQLNHPNVMKLEGIITSRTSSSLYLVFEYMDHDLAGLEAVLGSKFTEPQIKCYMQQLLRGLEHCHSRGVLHRDIKGSNLLIDGNGNLKISDFGLSTIYNPDKKEPMTSRVVTLWYRPPELLLGATEYGAAIDLWSAGCILAEMLVGKPIMPGRTEVEQMHKIFKLCGSPSEEFWQRTKLPHATSFKPQHRYKRRVSETFRDFPPSALALLEKLLAIEPEDRGSATSALQSEFFTTNPLPCDPSTLPKLPPSKEFDVKLRNEEARRKNAEAVPRRETATVARGARDTKVLPTPNFNAQGNISVQANPNTKTCCGKYNPSEDGRSHFKIEPTTVSVHDGYGHSTSVMHPAAEVSVLNHRSDSIRKNPVLRTQRSNVNQKAADFDNSSLNKDKDMSGGDPGTGYVPKKNRMHHSGPLMPPGGNIDDMLREHERLMQEAFRTVKDMNNHTHQNCH 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g2643 654 Coils Coil 5 25 - -
Sto4g2643 654 CDD STKc_CDK9_like 152 436 - -
Sto4g2643 654 Gene3D Transferase(Phosphotransferase) domain 1 235 476 - -
Sto4g2643 654 ProSitePatterns Protein kinases ATP-binding region signature. 158 181 IPR017441 GO:0005524
Sto4g2643 654 MobiDBLite consensus disorder prediction 9 29 - -
Sto4g2643 654 PANTHER CELL DIVISION PROTEIN KINASE 98 570 - -
Sto4g2643 654 MobiDBLite consensus disorder prediction 1 30 - -
Sto4g2643 654 Gene3D Phosphorylase Kinase; domain 1 139 234 - -
Sto4g2643 654 Coils Coil 628 648 - -
Sto4g2643 654 Pfam Protein kinase domain 152 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto4g2643 654 SMART serkin_6 152 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto4g2643 654 PANTHER OS02G0559300 PROTEIN 98 570 - -
Sto4g2643 654 SUPERFAMILY Protein kinase-like (PK-like) 145 444 IPR011009 -
Sto4g2643 654 MobiDBLite consensus disorder prediction 575 619 - -
Sto4g2643 654 ProSitePatterns Serine/Threonine protein kinases active-site signature. 272 284 IPR008271 GO:0004672|GO:0006468
Sto4g2643 654 ProSiteProfiles Protein kinase domain profile. 152 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g2643 Sto-Chr4 27555044 27560766 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g2643 144 478 Core Cell Cycle Gene Families AT5G10270 52.000 7.42e-120 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Sto4g2643 Pkinase 2.1e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g2643 K08819 - gmx:100791743 800.045