Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g2640 ATGAGTAGTGGTAGCAGCAAGAAGTACAAGGGAGTCCGGCAACGTAAGTGGGGCAAGTGGGTGTCGGAGATTCGTGTCCCCGGCTCGCCGGAGCGCCTCTGGTTGGGCACGTACGCCACGCCGGAGGCCGCGGCCGTGGCCCATGACGTGGCATTCTACTGCCTGAGGGGCCCGCTCTCTCTTCACAAGCTCAACTTCCCGGACATGTTGCCTTCCAGCTGTGTCCAGCTGCAGCGGAGCCGGCCGGACATGTCGCCGAGGTCCGCGCAGGCCGCCGCGTCCGAGGCCGGCATGGCGGTGGACGCGAAGAACGTCATCGAAGCGGAAGGGAGGAAcaatgaggaggaggaggagaaagaTAGTGTTGGTGAAGAAGAAGCACTGACTGTTGAAGTGGGTGAAGCTGTTCAAAATGATGAAAAAGTGAGGCCAAATGAAGGAGAGGACGATGATTATCATCAATTGTGCTATCAAGATTGCTTATTGGATTGCTTAGAACAGAATAATGATATGGATTTTTGCAGCCTCACCTGTGAAGCTCAGTGCCCAAGTTCATTGCATTGA 564 0.5355 MSSGSSKKYKGVRQRKWGKWVSEIRVPGSPERLWLGTYATPEAAAVAHDVAFYCLRGPLSLHKLNFPDMLPSSCVQLQRSRPDMSPRSAQAAASEAGMAVDAKNVIEAEGRNNEEEEEKDSVGEEEALTVEVGEAVQNDEKVRPNEGEDDDYHQLCYQDCLLDCLEQNNDMDFCSLTCEAQCPSSLH 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g2640 187 Coils Coil 99 125 - -
Sto4g2640 187 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF020 5 125 - -
Sto4g2640 187 ProSiteProfiles AP2/ERF domain profile. 8 67 IPR001471 GO:0003700|GO:0006355
Sto4g2640 187 SMART rav1_2 8 73 IPR001471 GO:0003700|GO:0006355
Sto4g2640 187 Pfam AP2 domain 8 57 IPR001471 GO:0003700|GO:0006355
Sto4g2640 187 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 5 125 - -
Sto4g2640 187 CDD AP2 7 68 IPR001471 GO:0003700|GO:0006355
Sto4g2640 187 MobiDBLite consensus disorder prediction 107 149 - -
Sto4g2640 187 PRINTS Ethylene responsive element binding protein signature 9 20 IPR001471 GO:0003700|GO:0006355
Sto4g2640 187 PRINTS Ethylene responsive element binding protein signature 31 47 IPR001471 GO:0003700|GO:0006355
Sto4g2640 187 Gene3D AP2/ERF domain 7 68 IPR036955 GO:0003700|GO:0006355
Sto4g2640 187 SUPERFAMILY DNA-binding domain 8 68 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g2640 Sto-Chr4 27539818 27543218 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g2640 8 139 AP2-EREBP Transcription Factor Family AT1G71520 50.370 8.07e-40 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto4g2640 AP2 2e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g2640 - - aprc:113869965 147.132