Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g2626 ATGGAAGAAGCCAATACTACACAAGCACGTGTCGATTGCCCGGCCGCGCCGCCGTCTTTCCGAGGAGTTCGCAAGCGAAAATGGGGAAAATGGGTGTCGGAGATCCGGGAACCCGGCAAGAAAACCCGGATATGGTTAGGGAGCTATGAGGCACCGGAAATGGCGGCGGCAGCGTATGACGTGGCGGCTTCTCACCTCCGGGGGCCATCCGCTCAGCTCAATTTTCCCGAGCTGTCTGGCGCTCTCCCCCGGCCGGCGAGCTCCCGTCCCGAGGATGTCCGGTTGGCAGCTCAACAAGCAGCATTGTTGTTCAGGAGGCCGGTGGGGTGCCGACCAACGGAGGAGGGTGGCGGCCGGGCGGGCCCGGTCACGGTGAGGTTGTCGCCGAGCCAAATTGAGGCGATCAACGAGTCGCCGTTGGATTCGCCGAAGATGTGGATGCAAATGGCGGAGGCTCTCATGTTAGGGTTTGATGACGAGTCCATGAGATTCATGTGTAATAacgaggaagatgatgatgatgtattAGAGAGAATGACAAGACTCATTAAGTCTGAAGATTCAGAATCCCTATGGGAGCTATCCCATTTGGAGAATTGGGTCATGCCCTTTCTGTCTTGTGAAGTCTGCATCCCGAAAATTTAA 645 0.5473 MEEANTTQARVDCPAAPPSFRGVRKRKWGKWVSEIREPGKKTRIWLGSYEAPEMAAAAYDVAASHLRGPSAQLNFPELSGALPRPASSRPEDVRLAAQQAALLFRRPVGCRPTEEGGGRAGPVTVRLSPSQIEAINESPLDSPKMWMQMAEALMLGFDDESMRFMCNNEEDDDDVLERMTRLIKSEDSESLWELSHLENWVMPFLSCEVCIPKI 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g2626 214 Gene3D AP2/ERF domain 19 77 IPR036955 GO:0003700|GO:0006355
Sto4g2626 214 Pfam AP2 domain 18 68 IPR001471 GO:0003700|GO:0006355
Sto4g2626 214 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF022 12 154 - -
Sto4g2626 214 ProSiteProfiles AP2/ERF domain profile. 19 76 IPR001471 GO:0003700|GO:0006355
Sto4g2626 214 PRINTS Ethylene responsive element binding protein signature 20 31 IPR001471 GO:0003700|GO:0006355
Sto4g2626 214 PRINTS Ethylene responsive element binding protein signature 58 78 IPR001471 GO:0003700|GO:0006355
Sto4g2626 214 SUPERFAMILY DNA-binding domain 19 76 IPR016177 GO:0003677
Sto4g2626 214 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 12 154 - -
Sto4g2626 214 SMART rav1_2 19 82 IPR001471 GO:0003700|GO:0006355
Sto4g2626 214 CDD AP2 18 78 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g2626 Sto-Chr4 27403386 27408709 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g2626 4 148 AP2-EREBP Transcription Factor Family AT1G71450 52.903 2.59e-50 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto4g2626 AP2 5.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g2626 - - zju:107421431 207.994