Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g2625 ATGGCTACGTTATCTAGTGGCGGTTTTTCTGAGGAAGGGTTTGGGAAGCCATTGGTGGATAGTAATAGGGTTCGTGCTTCTTGCTCTCAGCCCGTGAATGACTATGATCGGCGTCGTGTTTCTGCTATTCGTGATTATCCTCCTGGGTTTGCAAGATTTGCAGCAAGAAAAGCTGAGCTACGACACTCTGTGTTGTTGAAGAAAGAAGATGTTGAACATGCCAAAGTGAACAACGCAGGATTGAGTGCAGCTGTTGAATCTGTGAAATGTGAGAGTGACTTCTCGAATATTTCAAAGGATTTGCGTAAATCAGATGTGGGTTTAGTTTCTTCCAGAAATTATTTGCAGAAGGCTGTGACCAGAAGGTATCATCCTCTTGGAAGAGTTTCAGTTTCAGCCGTCAGACAATTCCCTCATTTATGTGGACGCAATGTTCTGAGTGTGGGTAAAAAGGCCTTGGATGCAGAAAAAGGGCCTTCGAAGAAGATAGCAGCTACTGATGTCAGAGAAGTGGAGAAGATTGTTCGTGATGGAGATGCTAGCAAGGCTAAGCTTAAGGGCATACAGTTGACTGGTGGTACAGaagaaaggaagagaaagaaaatcgATTACTTCGCACTGCTTGACAGGTCTAAAGTCTCACTACATCATTCTGGGAAGAAGcgtcttaaaaagaaaaaaaggaattatGCTTCTGAGGGTTTGGGAAAACTAGTAGTCCAGGAAGACACTACCAATGTGCATAGATCATGTGGTTTCAATGTAATTGTTCCTCCTCTCAGTCATCGTAATTTGAGTGGTCCCAGCACTATCCGTGACTCAAATGTGACCCGAAATACAGTGAGGGAGACGTTGCGCCTATACCAAGCTGTTTATAGAAAGCTATtgagggaagaagaagcaaagttAAGAGACCAATGTAGAAGGGTTGATTTAAAGGCGGCAATGATCCTTAAGGGCAAAGGGAAATATGTTAATACAGGCAACCAGATCTTGGGTTCTGTCCCTGGGATTGAAGTTGGTGATGAATTTCATTACAGGGTAGAGCTTAATGTTGTAGGCCTTCATCGCCATATACAGAATGGCATTGATTATGTGAAGGACCATGGGAAGATCCTTGCTACTAGTATTGTTGCATCAGGTGGCTACACTGATGAGCTGGATAATTCAGATGTCTTGATTTATTCAGGGCAAGGAGGAAATGTGATGAACACTAAAAAAGAACCCGAAGATCAGAAGCTTGAGCGGGGCAATCTTGCTTTGAAGAACAGTAGTGAGAAAAAGACTCCTGTTAGGGTTATACGCGGCTCTTCGTCAGAAGATGGAAGGCACAAGACATATGTTTATGATGGGTtgtatgtagttgagaaatacTGGCAGGATATAGGGCCACATGGTAAGCTCATTTTCATGTTTCAGATGCGGAGAATCCCAGGTCAACCGGAGCTTGCTTGGATTGAAGTGAAGAAGTCAAAAAAGTTTATGATGAGGAAGGGTGTGTGTGTTGATGACATCTCTAATGGGAATGAGGCATTTCCAATTTCTGCTGTCAACACCATAGATGACGAGAAACCACCGTCCTTTACGTATACAACTAGGATGATATATCCTGATTGGTGCCATCCCATTACTGCAGAAGGATGTAATTGTACTGATGGATGCACTCACCCAGCTACTTGTTCTTGTGCTTTCAAAAACGGAGGGATCCCATTCAATCACAGTGGATCCATTGTAGAAGTAAAGCCTCTAGTCTATGAGTGTGGTCCTTCTTGCAAATGCCCTTCAACATGCTACAACAGAGTCAGCCAGAATGGAATAAGATTTCTGCTCGAAATCTTTAAAACCGAGAAAAGGGGATGGGGTGTGAGATCTCTAAGTTCCATCCCTTCTGGAAGTTTTATCTGTGAATACATAGGAGAGCTTCTTGATGATACAGAAGCTGAGAAAAGAACTGGTAATGATGAATATCTGTTTGATATTGGGAAGTATTTCAGCAACAATACTCTTGTTGATGGACTTTCAAGGCGTGCACTTGATCCCCTGTCAAGTGAAGTTGTGGATGCTGGTAGCTTCACCATTGATGCTGCTTCGTATGGTAATGTGGGGAGATTTGTCAACCATAGTTGCTCTCCTAATCTGTATGCACAAAATGTTCTTTATGATCATAATGACCGTAGGTTTCCTCACGTAATGCTGTTTGCATTTGAGAACATTCCTCCCCTGCAAGAGCTGACTTATGATTACAACTACATAAAAGATCAAGTCTTTGATTCTGATGGCAACATTAAGAAGAAGGATTGTTATTGTGGTTCTGTGGGGTGTACTGCTGTTCCTTTATCATCAAGAACTGAAGATGTTGCTTGCTGA 2367 0.4119 MATLSSGGFSEEGFGKPLVDSNRVRASCSQPVNDYDRRRVSAIRDYPPGFARFAARKAELRHSVLLKKEDVEHAKVNNAGLSAAVESVKCESDFSNISKDLRKSDVGLVSSRNYLQKAVTRRYHPLGRVSVSAVRQFPHLCGRNVLSVGKKALDAEKGPSKKIAATDVREVEKIVRDGDASKAKLKGIQLTGGTEERKRKKIDYFALLDRSKVSLHHSGKKRLKKKKRNYASEGLGKLVVQEDTTNVHRSCGFNVIVPPLSHRNLSGPSTIRDSNVTRNTVRETLRLYQAVYRKLLREEEAKLRDQCRRVDLKAAMILKGKGKYVNTGNQILGSVPGIEVGDEFHYRVELNVVGLHRHIQNGIDYVKDHGKILATSIVASGGYTDELDNSDVLIYSGQGGNVMNTKKEPEDQKLERGNLALKNSSEKKTPVRVIRGSSSEDGRHKTYVYDGLYVVEKYWQDIGPHGKLIFMFQMRRIPGQPELAWIEVKKSKKFMMRKGVCVDDISNGNEAFPISAVNTIDDEKPPSFTYTTRMIYPDWCHPITAEGCNCTDGCTHPATCSCAFKNGGIPFNHSGSIVEVKPLVYECGPSCKCPSTCYNRVSQNGIRFLLEIFKTEKRGWGVRSLSSIPSGSFICEYIGELLDDTEAEKRTGNDEYLFDIGKYFSNNTLVDGLSRRALDPLSSEVVDAGSFTIDAASYGNVGRFVNHSCSPNLYAQNVLYDHNDRRFPHVMLFAFENIPPLQELTYDYNYIKDQVFDSDGNIKKKDCYCGSVGCTAVPLSSRTEDVAC 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g2625 788 SUPERFAMILY SET domain 492 750 IPR046341 -
Sto4g2625 788 Pfam SAD/SRA domain 332 480 IPR003105 -
Sto4g2625 788 Pfam Pre-SET motif 505 600 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Sto4g2625 788 ProSiteProfiles SET domain profile. 608 749 IPR001214 GO:0005515
Sto4g2625 788 SMART preset_2 502 592 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Sto4g2625 788 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 71 787 IPR025794 GO:0016571
Sto4g2625 788 Gene3D - 315 497 IPR036987 -
Sto4g2625 788 SUPERFAMILY PUA domain-like 313 490 IPR015947 -
Sto4g2625 788 SMART G9a_1 328 480 IPR003105 -
Sto4g2625 788 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 197 775 - -
Sto4g2625 788 Pfam SET domain 619 749 IPR001214 GO:0005515
Sto4g2625 788 Gene3D SET domain 498 777 IPR046341 -
Sto4g2625 788 SMART set_7 608 755 IPR001214 GO:0005515
Sto4g2625 788 ProSiteProfiles YDG domain profile. 333 476 IPR003105 -
Sto4g2625 788 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH6-LIKE ISOFORM X1 197 775 - -
Sto4g2625 788 ProSiteProfiles Pre-SET domain profile. 546 605 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g2625 Sto-Chr4 27394383 27397029 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g2625 266 774 Su(var)3-9 homologs AT5G04940 40.341 5.78e-115 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Sto4g2625 SAD_SRA 3.9e-51 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g2625 K11420 - gmx:100803378 772.311