Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g2609 ATGGACCAGGGAAAGCATAAATCTAGGAAGGATGATTCAGACAGGAAGGACATGGATTCCAATAGAAGTCACCGAGAACGTGATCGTGATAGAATtggagaaagagaaaagaacaaaaatgaAAGGAGGCACAGGGACAAAGAGAAGAGGGAtcatgagagagagaagagtAGTGATTCTGAAGACAGGTATGATAGAGAAAGGGAGAAGCGAAGAGaaagagatagagTTCGAGACAaaagaagggaaagagaaaggcaaaataaagaaagagaTAGGAGAGACAGGACAAGGgacaaagaaaaagagagagataaagaaagggaaaggaaggaGGAGAGGGTGAGggtaagagagagagataggGAAGTGGATAGGAGGCAGCGTGAGAGGGAAgtggaaagagaaagagagagtagACTATGTGATAGGGAAAACCATAGGGAAGTTGACAGTGACCATAGTGATGATATTTCTAGGAAGAGAGATAGAAAGCGCCATAAGAAAGAGGATGATGATCATAAGggtagagagaaggaaagaagcaCCAGCAAATTAAGTAGGCCAACTGAGGATATTGAAGTGAGCCCAAGGACAAAGAATGGTGAAGATGACTCAAATACCAATGAGAATACAGTTGCCTATGTAGAGGAGTTAGAGGATGAGCACAAGAAGTTGGATGAAGAAGCTgaaaagaggaggaggagagtgCAGGAGTGGCAAGAGCTTAGGAGGAAGAGGGAAGAAGCCGAGAGAGAAAAGCACGGTGAAGCAAGTACTGATGAACCCAAGGCTAGAAAGACCTGGACCCTTGAAGGGGAATCTGATGATGAAGAAGGACACAGTACAGGGATGGAAGATACAGCTATGAATATTGATGAAGATGATAAACGTGCCAATGAAGAGCTTGGAGATTTGATGATGGTAGATATTGGTAACACAACAGTTGCATCTGATTTACAGGATAGAACTGCTTCTTCTCCAGCTGATGAGGAAATTGATCCATTGGATGCTTTCATGAATTCTATGGTGCTTCCTGAAGTTGAAAAGCTGAACAATGCTTTGGCTCCTTCAACTGCTGACAGAAGTGCTGTCTTGAATCCCGATGACAAAGAGGATGAGCAAAGTCATGGTGGACGATTGAAGACAGGTTCAAATAAATCGATTGGGAGAATAATTCCTGGTGAAGAGTCTGACTTAGATTATGAAGACGCTGATAATGAGGACGATCCAttagatgaagatgatgatgagttCATGAAAAGAGTGAAGAAGACAAAAGCTGAGAAGCTAGCTATAGTTGACCACTCAAAGATTGACTATAAGCCATTTaagaaaaattttcatattgaagTGAAGGAGATCTCAAAGATGACACCTGAAGAAGTTGCAACATACAGGAAACAATTAGAGTTGAAGATACATGGAAAGGATGTGCCGAAGCCTGTAAAATCATGGCACCAGACTGGACTTACTGGAAAAATTTTGGAGACAATAAAGAAGCTTAACTATGAAAAGCCAATGTCCATTCAAGCTCAAGCATTGCCTATAATCATGAGTGGCAGAGATTGCATAGGTATTGCTAAAACTGGGTCTGGAAAAACACTTGCTTTTGTTTTGCCAATGTTGAGGCACATCAAGGATCAGCCACCAGTTGTTGCAGGAGATGGACCTATTGGCCTTATAATGGCTCCTACAAGGGAGCTTGTTCAACAAATTTACAGTGATATAAAGAAGTTTACGAAGGTACTGGGTCTTAGGTGTGTACCTGTCTATGGGGGTTCTGGTGTTGCCCAGCAAATTAGTGAGCTGAAACGTGGTGCTGAGATATTGGTTTGTACTCCTGGTCGGATGATTGACATACTTTGTACTAGTGGTGGAAAAATAACTAATCTTCGTAGAGTCACTTATCTGGTCATGGATGAGGCTGATCGAATGTTTGACATGGGTTTTGAACCCCAAATCACTCGAATTGTTCAGAACATTCGTCCAGACCGTCAAACTGTTCTCTTTTCTGCTACTTTCCCCCGTCAGGTTGAAGTTCTAGCTCGTAAAGTTTTGAATAGACCAGTTGAAATACAAGTTGGAGGGAGGAGTGTTGTGAACAAGGATATAACACAGCTAATTGAGGTTCGGCCAGAAAATGAGAGGTTCTTGAGGCTCTTAGAAATATTAGGAGAATGGTATGAGAAAGGAAAGATTTTGATATTTGTACAGTCACAGGAGAAATGTGATGCTTTGTTTAAGGATTTGCTTAGGCATGGTTATCCTTGCCTCTCTCTTCATGGGGCTAAGGATCAGACAGACCGTGAATCCACAATTTCTGATTTTAAAAGAAATGTCTGCAATTTGTTGATTGCAACAAGTGTTGCTTCCAGGGGGCTAGATGTCAAGGAGCTTGAATTGGTGATCAATTTTGATGTGCCAAACCACTATGAAGATTATGTACACCGTGTTGGACGCACTGGCCGAGCTGGCCGGAAGGGTTGTGCTATCACATTTATTTCTGAGGAAGATGCAAGGTATGCACCAGATCTGGTGAAAGCCTTGGAGCTATCTGAGCAAATTGTTCCTGATGATCTGAAAGCTCTTGCTTGTAGCTTTACGGCAAAAGTGAATCAAGGAATTGAGCAAGCTCATGGGAGTGGTTATGGAGGCAGTGGTTTTAAATTTAATGAAGAGGAAGATGAGGTGAGGAAAGCAGCAAAGAAAGCACAAGCCAAAGAATATGGGTTTGAAGAAGACAAATCAGAttctgaagatgatgatgaaggtatCAGGAAGGCAGGAGGTGATATTACACAGCATCCTGCTCTTGCTCAGATTCTTGCTGCCACTAAAGGAAATTCAACTGCAGTGCCTGCTCCTAACCCCAATGCACAGCTGATGTCAAATGTGGCATCAGGGCTGCCCCTTGTGCCAAATGATGGGGCAGCTCGAGCAGCATTAGCTGCTATAAACTTACAGCACAAGTTAGCAAAGATTGCTGGTGCAATCCCAGAGCATTATGAAGCCGAGTTGGAGATAAATGATTTCCCCCAGAATGCTCGGTGGAAAGTTACACACAAGGAAACATTGGGTCCAATTGCTGAATGGAATGGAGCTGCTATTACCACTAGAGGGCAGTATTTCCCATCTGGCAAGGTCCCAGGTCCTGGAGAACGCAAACTTTACTTGTTCATTCAAGGTCCAACTGAGCAGTCTGTTAAAAGAGCCAAAGCAGAATTAAAGCGTGTTTTAGAAGACATCACAAATCGGGCTTTGCAACTTCCTGGTGGAGCTCAACCAGGAAAATACTCAATTGTCTAG 3309 0.3947 MDQGKHKSRKDDSDRKDMDSNRSHRERDRDRIGEREKNKNERRHRDKEKRDHEREKSSDSEDRYDREREKRRERDRVRDKRRERERQNKERDRRDRTRDKEKERDKERERKEERVRVRERDREVDRRQREREVERERESRLCDRENHREVDSDHSDDISRKRDRKRHKKEDDDHKGREKERSTSKLSRPTEDIEVSPRTKNGEDDSNTNENTVAYVEELEDEHKKLDEEAEKRRRRVQEWQELRRKREEAEREKHGEASTDEPKARKTWTLEGESDDEEGHSTGMEDTAMNIDEDDKRANEELGDLMMVDIGNTTVASDLQDRTASSPADEEIDPLDAFMNSMVLPEVEKLNNALAPSTADRSAVLNPDDKEDEQSHGGRLKTGSNKSIGRIIPGEESDLDYEDADNEDDPLDEDDDEFMKRVKKTKAEKLAIVDHSKIDYKPFKKNFHIEVKEISKMTPEEVATYRKQLELKIHGKDVPKPVKSWHQTGLTGKILETIKKLNYEKPMSIQAQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVVAGDGPIGLIMAPTRELVQQIYSDIKKFTKVLGLRCVPVYGGSGVAQQISELKRGAEILVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEVLARKVLNRPVEIQVGGRSVVNKDITQLIEVRPENERFLRLLEILGEWYEKGKILIFVQSQEKCDALFKDLLRHGYPCLSLHGAKDQTDRESTISDFKRNVCNLLIATSVASRGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARYAPDLVKALELSEQIVPDDLKALACSFTAKVNQGIEQAHGSGYGGSGFKFNEEEDEVRKAAKKAQAKEYGFEEDKSDSEDDDEGIRKAGGDITQHPALAQILAATKGNSTAVPAPNPNAQLMSNVASGLPLVPNDGAARAALAAINLQHKLAKIAGAIPEHYEAELEINDFPQNARWKVTHKETLGPIAEWNGAAITTRGQYFPSGKVPGPGERKLYLFIQGPTEQSVKRAKAELKRVLEDITNRALQLPGGAQPGKYSIV 1102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g2609 1102 SMART ultradead3 503 708 IPR014001 -
Sto4g2609 1102 MobiDBLite consensus disorder prediction 216 293 - -
Sto4g2609 1102 MobiDBLite consensus disorder prediction 1 293 - -
Sto4g2609 1102 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 515 693 IPR014001 -
Sto4g2609 1102 MobiDBLite consensus disorder prediction 900 914 - -
Sto4g2609 1102 Pfam Helicase conserved C-terminal domain 718 826 IPR001650 -
Sto4g2609 1102 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 484 512 IPR014014 GO:0003724
Sto4g2609 1102 SMART helicmild6 745 826 IPR001650 -
Sto4g2609 1102 MobiDBLite consensus disorder prediction 354 417 - -
Sto4g2609 1102 MobiDBLite consensus disorder prediction 1 205 - -
Sto4g2609 1102 MobiDBLite consensus disorder prediction 900 932 - -
Sto4g2609 1102 Pfam DEAD/DEAH box helicase 509 680 IPR011545 GO:0003676|GO:0005524
Sto4g2609 1102 Gene3D - 436 694 IPR027417 -
Sto4g2609 1102 Coils Coil 70 90 - -
Sto4g2609 1102 MobiDBLite consensus disorder prediction 365 380 - -
Sto4g2609 1102 Gene3D - 695 868 IPR027417 -
Sto4g2609 1102 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 704 865 IPR001650 -
Sto4g2609 1102 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 639 647 IPR000629 -
Sto4g2609 1102 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 556 842 IPR027417 -
Sto4g2609 1102 Coils Coil 209 253 - -
Sto4g2609 1102 CDD SF2_C_DEAD 705 835 - -
Sto4g2609 1102 Coils Coil 1066 1086 - -
Sto4g2609 1102 MobiDBLite consensus disorder prediction 399 416 - -
Sto4g2609 1102 PANTHER LOW QUALITY PROTEIN: DEAD-BOX ATP-DEPENDENT RNA HELICASE 42-LIKE 148 939 - -
Sto4g2609 1102 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 148 939 - -
Sto4g2609 1102 CDD DEADc_DDX46 473 694 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g2609 Sto-Chr4 27277987 27281379 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g2609 471 846 Eukaryotic Initiation Factors Gene Family AT3G19760 31.316 1.51e-55 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g2609 K12811 - gmx:100784306 1506.89