Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g2592 ATGGGAAGGGGAAAGATAGAGATAAAGAGGATAGAGAACACAACAAACAGGCAAGTGACATTCTGTAAGAGAAGGAATGGGCTTTTGAAAAAAGCTTATGAGCTTTCTGTTCTGTGTGATGCTGAAGTTTCTCTCATTGTCTTCTCCACTCGTGGTCGTCTCTATGAGTACTCCAATAACAACATAAGGTCAACTATAGAGAGGTACAAAAAAGCCTGTTCAGATCATTCAAGTAGTAGCTCAACTACTGAAATCAATGCTCagTATTATCAACAAGAATCTGCGAAGCTACGACAACAGATACAGATGCTGCAAAATTCAAACAgGCACTTGATGGGTGATGCCGTGAGCACACTTACAGTGAAGGAACTGAAGCAGCTGGAGAACAGACTTGAAAGAGGACTCTCTAGAATCAGATCTAAGAAGGAGATTGAACTTGATAATGAAAACCTTTGCATTCGGACTAAGATAGCAGAAGTAGAGAGGGTTCAGGAAGAAGCAAACAATATGGTTTCAGGTGGAGCAGAGCTGAATGCCATAGAGGCATTAGCTTCTCGCAATTTCTTCGGTTCTCCAAACATCATTCAACCTCCTCCAACTTCCTACCCTCAACATGACAAGAAGATTCTTCATCTCGGGTATGTAAGTGTGGAGATAGAAGAATACATCCTCCCCAGCTAG 681 0.4156 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSTRGRLYEYSNNNIRSTIERYKKACSDHSSSSSTTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDAVSTLTVKELKQLENRLERGLSRIRSKKEIELDNENLCIRTKIAEVERVQEEANNMVSGGAELNAIEALASRNFFGSPNIIQPPPTSYPQHDKKILHLGYVSVEIEEYILPS 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g2592 226 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL11 2 196 - -
Sto4g2592 226 PANTHER SERUM RESPONSE FACTOR HOMOLOG 2 196 - -
Sto4g2592 226 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Sto4g2592 226 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Sto4g2592 226 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Sto4g2592 226 Gene3D - 13 110 IPR036879 GO:0003677|GO:0046983
Sto4g2592 226 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Sto4g2592 226 Coils Coil 87 107 - -
Sto4g2592 226 Coils Coil 121 144 - -
Sto4g2592 226 Pfam K-box region 85 156 IPR002487 GO:0003700|GO:0005634|GO:0006355
Sto4g2592 226 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Sto4g2592 226 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Sto4g2592 226 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Sto4g2592 226 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Sto4g2592 226 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Sto4g2592 226 ProSiteProfiles K-box domain profile. 87 183 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g2592 Sto-Chr4 27143524 27151689 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g2592 1 213 MADS-box Gene Family AT4G09960 70.563 7.66e-110 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Sto4g2592 K-box 1.9e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g2592 K09264 - gmx:100785089 326.635