Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g2570 ATGCTTCCTCACTTGCTTGGCCATGTTCTTCCTGCATGTAAGGCTGGGTTGGAAGACCCAGATGACGATGTCCGAGCAGTTGCTGCTGATGCCTTAATACCCGCTGCAGCTGCAATTGTTTCCTTGCAGGGCCAAACACTGCTCTCAATAGTAATGCTGTTGTGGGATATATTGCTTGATTTGGATGATTTAAGTCCGTCTACTAGCAGCGTAATGAATTTGCTGGCAGAAATATATTCTCAGGAGATGGTCCAAAAAAGGGATAAAGTACTTAAATTGGAAGACACGGAAATGTTTGATGTGAATGGATTATGCTGTGATGGTAATGATGGTGAAGGAAATGTTAGTATGCTTTCTACATTGGCACCACGGTTATGGCCCTTTATGAGGCATAGTATCACATCTGTCCGTTACTCAGCAATTCGCACATTGGAGAGGCTTCTTGAAGCTGGATATAAGAGAAGCAAGTCTGAGCAAACCAGAACTTCATTTTGGCCTCCCTTTATATTGGGTGATACCCTTCGAATTGTCTTTCAGAACCTGCTATTAGAAACAAATGAGGATATTTTGCAGTGTTCTGAAAGAGTTTGGAGGCTCCTAGTACAGAGTCCAGAGGAGGACTTGGAGACTGTAGCAAGCTCTTACATGACTTCTTGGATAGAACTTGCATCTACACCGTTTGGTTCATCACTGGATGCCTCAAAGATGTTTTGGCCGGTTGCCTTTCCAAGAAAGAGTCAATTTAGAGCAGCAGCTAAAATGAGAGCTGCGAAGGTTGAATATGAATCTGGTGGAGATTTTGGTCTGGGTTCTATAAAAGGAGCTGTTCAAGAAAGAAATGGAGATGTTGCTATTGATTCAACGAAGATGGTGGTTGGTGCTGATGTGGACTCATCAATAACTCGTACTCGGGTGGTTACAGCAACTGCTTTAGGAATTTTTGCATCTAAGCTTCGAGAAGGTTCTATCAAATATGTGATTGATCCATTGTGGAGCAGTCTCACCTCTTTGTCGGGTGTCCAGCGCCAGGTTGCATCTATGGTACTTATTTCATGGTTCAAGGAGATTAAAAGCAGGCAATTCTCTGAAGACCCTAATGGTATTCCTGGTGTCCCTAGCTATTTCAAAGATTGGTTGCTGGACTTATTGGCATGTTCTGATCCAGCATTTCCAACAAAAAATTCACTTCTTCCTTATGTTGAGCTTTCAAGAACATATGCTAAGATGCATACTGAGGCTGGTCAATTGCTGAATGCTATGAAGTCTTCTGGTATGTTTAATGAGTTGTTGTTGACTACAAAAATTGAGTTGGAGAGCTTGAGTGTGGATAATGCTATTAGTTTTGCATCAAAAGTTCCATCGTTTTGTAATGATGGTGCTGGGAATGAGTCCTCAGAGAGGAACATTATGGATGATGTAGAGTCATCAAAACAGAGACTCTTGACAACTTCAGGCTATTTGAAATGTGTTCAGAGTAATTTGCATGTTACGGTCTCATCTGCAGTCGCGGCTGCCGTTGTCTGGATGTCAGAATTTCCCTCTCGACTCACCCCAATCATTTTGCCTTTGATGGCTTCAATCAAACGGGAGCAGGAGGAAATATTGCAAATAAAGTCAGCTGATGCACTTGCTGAGCTTATGTATCATTGTGTTACACGCAAGCCTTGCCCAAATGACAAGTTAATTAAGAATATTTGTGGTTTGACTTGCATGGATCCCTCTGAGACACCCCAAGCTAAATTTATTTGCACTATGGAGAATATTGATGACCTAGGTCTTCTGTCGTTTGGAACTTCAGTGGCTAAGCAGAAGTCTAAGGTCAATGTGCTGACTGCTGAAGATCGATCGAAGTTGGAGGGATTTATTAGTAGACGAGGATCTGAGCACTCCTTGAGGCTTCTATGTGAGAAGTTTGGTGCTTCATTGTTTGATAAGCTTCCAAAACTGTGGGATTGCCTTACTGAGGTGCTTAAGCCAAGCTCTGCTGAATCTCTAGCTTCTGCTGATGAAAAACATGTCACAGTTGCCCTTGAGTCTGTTAGTGATCCCCAGAGCTTGATTAACAATATCCAGGTAGTACGTTCTATTTCTCAGGTGTTAAATGATCAGTTGAAGCCAAAATTGTTGACACTTCTCCCTTGCATTTTTAAGTGTGTTAAGCATTCTCATGTTGCTGTTAGATTAGCTGCTTCACGTTGCATCACTACAATGGCCAGGTCAATGACTATGATAATCATGGGAGCTGTAATTGAAAATACTATCCCCATGTTGGCAGATGCATCATCTGTTCATGCTCGGCAAGGTGCTGGCATGCTGGTTAGTTTTCTTGTGCAGGGATTAGGAGTCGAGTTGGTCCCTTATGCTCCTCTGTTGGTGGTTCCACTTCTGAAGTGTATGAGTGATTGTGATCAGTCTGTCAGACAGAGTGTGACCCATAGTTTTGCTGCTCTTGTACCTCTTCTTCCTTTAGCACGGGGCCTTCCTCCACCTGTAGGATTAGGGGAAGGTTTGTCTAGGAACACAGAAGATGTGCAATTTTTGGAGCAACTACTTGACAACACTCATATTGAAGATTACAAGTTGTGCACTGAATTGAAAGTAACATTGAGAAGGTATCAACAGGAAGGCATGAATTGGTTGGCTTTCTTGAAGCGTTTCAAGCTTCATGGAATTTTGTGTGATGACATGGGGCTTGGTAAGACACTTCAAGCTTCAGCGATTGTGGCATCTGATATAGTTGAGCATCGGACTTCAAAGGGGAATGAGGATCTTTTGTCATCTTTAATTGTTTGCCCATCAACACTTGTTGGACATTGGGCCTTTGAGATAGAAAAGTATATTGATAGTTCTGTTATATCTACTCTTCAATATGTTGGTTCTGCTCAGGAGCGGATGAGTCTACGAGATCACTTTTGCAAGCATAATGTCATTATAACATCATATGATGTTGTCCGTAAAGATATTGATTATTTGGGTCAGCTTCTGTGGAATTACTGCATCTTAGACGAAGGGCATATAATCAAGAATGCTAAGTCTAAAGTTACACTTTCTGTAAAGCAGTTGAAAGCCCAACACCGCCTGATATTGAGTGGAACACCTATACAGAATAACATTGTGGACTTGTGGTCCCTGTTTGACTTTCTAATGCCAGGATTTCTTGGTACAGAAAGACAGTTCCAAGCTGCTTATGGAAAACCACTTCTAGCTGCTAGAGATCCCAAGTGCTCTGCTAAGGATGCTGAAGCTGGAGCACTTGCTATGGAGGCATTGCATAAGCAGGTCATGCCTTTTCTCCTTCGTAGAACAAAGAGTGAAGTCTTGGCTGATCTTCCAGAGAAAATAATTCAGGACAGATATTGTGATTTGAGCCCTGTACAACTGAAATTGTACGAGCAGTTTTCTGGTTCTCGTGCAAAACAAGAAATCTCATCTATTGTATCAGTTAATGAATCAGCTGCGACAGAAGGTAGTAGCAATTCACCTAAAGCATCATCATCCCATGTTTTCCAGGCACTTCAATACTTGCTAAAGCTGTGTAGTCATCCCTTACTAGTAACCAGTGAGAAGATTCCAGATTCACTGTCTGTTGTTCTCTCAGAACTGTTGCCTGCTGGCTCTGACATGACCTCAGAACTACACAAATTGCATCACTCCCCAAAATTGGTTGCTCTTAAAGAGATTCTGGAAGAGTGTGGGATTGGAGTTGATGCTTCAGGCTCTGAGGGTGTCATTAGCACTGGGCAGCATAGGGTCTTGATTTTTGCTCAACATAAGGCGTTTCTGGATATAATTGAAAGAGATTTGTTTCAGACACACATGACGAAtgtCACATATTTGCGGCTGGATGGATCAGTTGTGCCAGAGAAGCGTTTTGAAATTGTCAAAGCTTTTAATTCAGACCCTACCATTGATGTCATGCTGCTTACGACACATGTGGGTGGGCTTGGTTTAAACCTGACATCTGCAGATACCCTTGTTTTTGTGGAGCATGACTGGAATCCAATGCGAGATCATCAGGCCATGGACAGAGCACACAGGTTAGGTCAGAAAAAAGTTGTTCATGTCCATCGTCTAATAATGCGTGGTACTTTGGAAGAAAAAGTTATGAGCCTTCAAAGGTTCAAAGTTTCAGTGGCTAATGCGGTCATTAATTCAGAAAATGCTAGTATGAAAACAATGAATACAGATCAGCTGCTTGATTTATTTGCATCATCAGAAACCTCCAAGAAGGGAGCTTCTGCTGCCAAGCGTCCAGAAAACAACTCTGATGAAGACACTAAATTTGTTGGTGGCGGAAAGGGATTGAAGGCAATACTGGGGGGATTGGAGGAGCTATGGGACCAATCACAATATACAGAAGAGTACAATCTGAGTCAATTCTTAGCAAAGCTTAATGGCTAA 4401 0.4217 MLPHLLGHVLPACKAGLEDPDDDVRAVAADALIPAAAAIVSLQGQTLLSIVMLLWDILLDLDDLSPSTSSVMNLLAEIYSQEMVQKRDKVLKLEDTEMFDVNGLCCDGNDGEGNVSMLSTLAPRLWPFMRHSITSVRYSAIRTLERLLEAGYKRSKSEQTRTSFWPPFILGDTLRIVFQNLLLETNEDILQCSERVWRLLVQSPEEDLETVASSYMTSWIELASTPFGSSLDASKMFWPVAFPRKSQFRAAAKMRAAKVEYESGGDFGLGSIKGAVQERNGDVAIDSTKMVVGADVDSSITRTRVVTATALGIFASKLREGSIKYVIDPLWSSLTSLSGVQRQVASMVLISWFKEIKSRQFSEDPNGIPGVPSYFKDWLLDLLACSDPAFPTKNSLLPYVELSRTYAKMHTEAGQLLNAMKSSGMFNELLLTTKIELESLSVDNAISFASKVPSFCNDGAGNESSERNIMDDVESSKQRLLTTSGYLKCVQSNLHVTVSSAVAAAVVWMSEFPSRLTPIILPLMASIKREQEEILQIKSADALAELMYHCVTRKPCPNDKLIKNICGLTCMDPSETPQAKFICTMENIDDLGLLSFGTSVAKQKSKVNVLTAEDRSKLEGFISRRGSEHSLRLLCEKFGASLFDKLPKLWDCLTEVLKPSSAESLASADEKHVTVALESVSDPQSLINNIQVVRSISQVLNDQLKPKLLTLLPCIFKCVKHSHVAVRLAASRCITTMARSMTMIIMGAVIENTIPMLADASSVHARQGAGMLVSFLVQGLGVELVPYAPLLVVPLLKCMSDCDQSVRQSVTHSFAALVPLLPLARGLPPPVGLGEGLSRNTEDVQFLEQLLDNTHIEDYKLCTELKVTLRRYQQEGMNWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIVEHRTSKGNEDLLSSLIVCPSTLVGHWAFEIEKYIDSSVISTLQYVGSAQERMSLRDHFCKHNVIITSYDVVRKDIDYLGQLLWNYCILDEGHIIKNAKSKVTLSVKQLKAQHRLILSGTPIQNNIVDLWSLFDFLMPGFLGTERQFQAAYGKPLLAARDPKCSAKDAEAGALAMEALHKQVMPFLLRRTKSEVLADLPEKIIQDRYCDLSPVQLKLYEQFSGSRAKQEISSIVSVNESAATEGSSNSPKASSSHVFQALQYLLKLCSHPLLVTSEKIPDSLSVVLSELLPAGSDMTSELHKLHHSPKLVALKEILEECGIGVDASGSEGVISTGQHRVLIFAQHKAFLDIIERDLFQTHMTNVTYLRLDGSVVPEKRFEIVKAFNSDPTIDVMLLTTHVGGLGLNLTSADTLVFVEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSVANAVINSENASMKTMNTDQLLDLFASSETSKKGASAAKRPENNSDEDTKFVGGGKGLKAILGGLEELWDQSQYTEEYNLSQFLAKLNG 1466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g2570 1466 Pfam SNF2-related domain 888 1184 IPR000330 GO:0005524|GO:0140658
Sto4g2570 1466 CDD SF2_C_SNF 1217 1359 - -
Sto4g2570 1466 SUPERFAMILY ARM repeat 4 911 IPR016024 -
Sto4g2570 1466 Gene3D - 1111 1428 IPR027417 -
Sto4g2570 1466 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 846 1101 IPR027417 -
Sto4g2570 1466 MobiDBLite consensus disorder prediction 1409 1428 - -
Sto4g2570 1466 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1238 1394 IPR001650 -
Sto4g2570 1466 MobiDBLite consensus disorder prediction 1412 1428 - -
Sto4g2570 1466 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 881 1051 IPR014001 -
Sto4g2570 1466 SMART helicmild6 1262 1348 IPR001650 -
Sto4g2570 1466 CDD DEXHc_Mot1 869 1101 IPR044078 GO:0005524
Sto4g2570 1466 SMART ultradead3 865 1061 IPR014001 -
Sto4g2570 1466 Pfam Domain of unknown function (DUF3535) 196 652 IPR022707 -
Sto4g2570 1466 PANTHER TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172 1 1398 IPR044972 GO:0003677|GO:0016887|GO:0017025
Sto4g2570 1466 Pfam Helicase conserved C-terminal domain 1247 1348 IPR001650 -
Sto4g2570 1466 Gene3D - 840 1100 IPR038718 -
Sto4g2570 1466 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1102 1404 IPR027417 -
Sto4g2570 1466 Gene3D - 2 211 IPR011989 -
Sto4g2570 1466 Gene3D - 483 826 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g2570 Sto-Chr4 26974296 26990781 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g2570 841 1403 RAD5 or RAD16-like Gene Family AT1G02670 25.280 3.52e-41 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Sto4g2570 DUF3535 1.7e-101 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g2570 K15192 - gmx:100777977 2351.24