LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto4g2523	ATGGATGCATCAACCAGTACGTGTGAGATAGTGGAATCGAGAGAAGATATATTTTCTGAGTTCAGAATGGATGAAAAAGCTGAGAGTAGTTGTGCACACAAATTGGGGAAAAAGTATTCAATAGAGGATGATATTGATCGCCTTTTCCAAGCAATTGACTTTAAAAATTCAGCTAGAGGTTCTAGTACGCCACGTTCACAAAAGAGTGCTCTTAAAAGGCCTATAAAAGTCAGTTCATCTCAGGCATCAGGAATTGGGATCTCTGAGCCTGTAAGTTTGAAGCAGGCACTCAGAGGGCTGTGCATATCTCAGGCATCAGAAATGGCTGCTTTGAAGCGACTATCAAAGCCGTGCAGTTCCTCTAGAGTATCCGAGGCtggaaatattaaaaagttgTATACAGCAGTGGTAGTGCCAGAGATATCTGCGCCTTCCGATAAATTGCCCAAAGAAGAGAAGTCAAGTTCTGGCGCTGATCATTCTACTCCTTTTGTTGATGCAACGAATCCAAAAGCAACCACGACCAAATTGGCATCCCGAGATCAGATAGTTCCTTTTCCATCAGAAGTTGATTCGGTGGCTGGAAAATCAATATCTGCAAATTCTTCCTCAGTTGCTTACGAAGGTGTGGAAGTGCCCTCTTCAAGCAAAGCTTCTGTGGGATCTTCAATGCCAGATAAGGGGCAGGAAGTGAAATCCCATTCTGAAGCTTATCCACCGAGCTCTAGCACTAATAGTGGGGTGGATAAATCCACAAGCAGTATTACTTGTTTGGCAAAGCCAATGTTCAGGAACAGGAGCTTCCTTAAGAAAAAAGTAAAGCAAGATTTGTGTTCTGCCTCGAGCACTGCAAAAGTTGACAAAGACTTGGATCCTAGTACAAGTAATTTGAGCAAGGAGACTGGAAAATCTAATTTGaagaatgaaatTTCAAATCATAGCATGGAAGTTAACTCAATTAATGTGGGCATGGATTCAAGCAAGCCTGGTTTCAGTATGAATTGCGGTAAGAGAACTAAATTTCTAgtgacaaaaattgatgaaaaatcaaGATCAAAGGAAAAAGGTGAATTCTCTCAAAGCTCTAAAAGTAGCATTGGTGAGTATAGTAGTAGCACAAGCATAAGTGAAGAGAGCAATCTAAGCGGCTCTAGTCGCAGCGGCCACCGGCCTCACATGTCAAAACACTTGAGATGGGAAGCTATTCGTGCTGTTCAGCAGCAGCACGGTAACTTAAGTTTGAGGCACTTCAAGTTGCTCAGGAGGCTTGGTTGTGGGGACATCGGAACTGTTTATCTTGCAGAACTGATTGGTACAAACTGCTTCTTTGCTTTGAAAGTGATGGACAATGAATTTTTGGCAACCCGGAAGAAAATGTTCAGGGCTCAAACTGAAAGAGAGATCCTGCAAATGCTGGATCATCCTTTTCTTCCTACGCTATATGCATACATTACTACAGATAAGCTCTCTTGCTTGGTTATGGAGTACTGCCCAGGTGGAGATCTGCATGTGCTGCGCCAGAGGCAACCGTATAGGAGTTTCTCAGAACAAGCAGCCAGGTTTTATGTTGCTGAAATTCTCCTTGCCTTGGAGTATTTGCACATGCTTGGAGTAATCTATCGGGACCTCAAACCCGAAAACATCTTGGTCCGAGAAGATGGTCACATTATGCTGACAGATTTCGACTTGTCACTTAGATGTTCTGTCAATCCAACGCTAGTGAAGTCATCTTCGCCAGATGTGGATTCAACGAAGAAGATGTCCAGTCCGTGCGCAGAAGCTAGCTGCATACACCCTTTCTGTCTACAACCCAACTGGCAAGTCTCCTGTTTTACTCCCATTCTTTTATCCGCCGGAGCAAAATCCCGAAAGATGAAATCCGACATAGCTTCTCAGGTTGGTCCACTACCACAGCTTGTAGTAGAGCCGACCAGCGCCCGTTCTAACTCTTTCGCATCACAGAAGGAGAATGCAAATGATTTAGAGGATACTGAAGATTGCGAGGAGTTTGAGCTATTTTAG	2022	0.4278	MDASTSTCEIVESREDIFSEFRMDEKAESSCAHKLGKKYSIEDDIDRLFQAIDFKNSARGSSTPRSQKSALKRPIKVSSSQASGIGISEPVSLKQALRGLCISQASEMAALKRLSKPCSSSRVSEAGNIKKLYTAVVVPEISAPSDKLPKEEKSSSGADHSTPFVDATNPKATTTKLASRDQIVPFPSEVDSVAGKSISANSSSVAYEGVEVPSSSKASVGSSMPDKGQEVKSHSEAYPPSSSTNSGVDKSTSSITCLAKPMFRNRSFLKKKVKQDLCSASSTAKVDKDLDPSTSNLSKETGKSNLKNEISNHSMEVNSINVGMDSSKPGFSMNCGKRTKFLVTKIDEKSRSKEKGEFSQSSKSSIGEYSSSTSISEESNLSGSSRSGHRPHMSKHLRWEAIRAVQQQHGNLSLRHFKLLRRLGCGDIGTVYLAELIGTNCFFALKVMDNEFLATRKKMFRAQTEREILQMLDHPFLPTLYAYITTDKLSCLVMEYCPGGDLHVLRQRQPYRSFSEQAARFYVAEILLALEYLHMLGVIYRDLKPENILVREDGHIMLTDFDLSLRCSVNPTLVKSSSPDVDSTKKMSSPCAEASCIHPFCLQPNWQVSCFTPILLSAGAKSRKMKSDIASQVGPLPQLVVEPTSARSNSFASQKENANDLEDTEDCEEFELF	673

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto4g2523	673	SUPERFAMILY	Protein kinase-like (PK-like)	390	569	IPR011009	-
	Sto4g2523	673	MobiDBLite	consensus disorder prediction	644	673	-	-
	Sto4g2523	673	PANTHER	SERINE/THREONINE-PROTEIN KINASE D6PKL1 ISOFORM X1	1	653	-	-
	Sto4g2523	673	MobiDBLite	consensus disorder prediction	359	388	-	-
	Sto4g2523	673	ProSiteProfiles	Protein kinase domain profile.	417	673	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sto4g2523	673	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	538	550	IPR008271	GO:0004672\|GO:0006468
	Sto4g2523	673	PANTHER	FLIPPASE KINASE 1-RELATED	1	653	-	-
	Sto4g2523	673	Gene3D	Transferase(Phosphotransferase) domain 1	501	567	-	-
	Sto4g2523	673	MobiDBLite	consensus disorder prediction	204	252	-	-
	Sto4g2523	673	Pfam	Protein kinase domain	418	569	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sto4g2523	673	MobiDBLite	consensus disorder prediction	158	180	-	-
	Sto4g2523	673	Gene3D	Phosphorylase Kinase; domain 1	416	500	-	-
	Sto4g2523	673	MobiDBLite	consensus disorder prediction	235	252	-	-
	Sto4g2523	673	SMART	serkin_6	417	652	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sto4g2523	673	MobiDBLite	consensus disorder prediction	280	312	-	-
	Sto4g2523	673	MobiDBLite	consensus disorder prediction	144	180	-	-
	Sto4g2523	673	MobiDBLite	consensus disorder prediction	352	393	-	-
	Sto4g2523	673	MobiDBLite	consensus disorder prediction	204	228	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto4g2523	Sto-Chr4	26614130	26617431	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sto4g2523	342	656	AGC Kinase Gene Family	AT3G52890	68.012	3.43e-142	436

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_RSK-2	Sto4g2523		Pkinase	1e-36	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto4g2523	-		-	gmx:100789339	938.717