Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g2515 ATGGATGATTTGTTTGATCGTCTCCCTGATGAAGCCAAACTAGGGATCACCATCTTCTATGTGCTAGAAATACTCGCAAATATTTTAGGGATGGCATATTACATGTATCCAAACAAAGTCTTAGCAATTGCCGTTTTAACGACGGTAATCCTCGGGTTCTTGTTTggttttttaacaattttaattGTTAGAAGAGATAATCGACTCGGTGAAGTGAACGACATCGAGAATCAACTTCAGAGTTCTGATCAAACGACACGGAGTTCTAGGCTTTTTACTATGGCTCTGCCGCCGCTAAAGAGTTTTAGCAGTGACGATAATAATGAAACGACTTTGTCGTCTTCCGCACAGTGTGTCGTTTGCTTGGAAGAATTCAAGAACGGGGAGATGATTCAGCCTTTTCCAAGTTGCGGCCATGAGTTTCATGTGTCTTGCATTCGTTCTTGGTTGAACGGTGGAAATATTACGTGTCCGATATGTCGTTTTAGCTTACAAGATGTAATATTGTCTACACTAACTACTACTAGTATTACTACCTAG 540 0.3963 MDDLFDRLPDEAKLGITIFYVLEILANILGMAYYMYPNKVLAIAVLTTVILGFLFGFLTILIVRRDNRLGEVNDIENQLQSSDQTTRSSRLFTMALPPLKSFSSDDNNETTLSSSAQCVVCLEEFKNGEMIQPFPSCGHEFHVSCIRSWLNGGNITCPICRFSLQDVILSTLTTTSITT 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g2515 179 CDD mRING-H2-C3H2C2D_ZSWM2 117 161 - -
Sto4g2515 179 SUPERFAMILY RING/U-box 117 165 - -
Sto4g2515 179 PANTHER OS06G0666500 PROTEIN 62 166 - -
Sto4g2515 179 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 62 166 - -
Sto4g2515 179 Pfam Ring finger domain 117 161 IPR001841 -
Sto4g2515 179 SMART ring_2 118 160 IPR001841 -
Sto4g2515 179 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 168 IPR013083 -
Sto4g2515 179 ProSiteProfiles Zinc finger RING-type profile. 118 161 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g2515 Sto-Chr4 26514008 26514547 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g2515 40 164 C3H Transcription Factor Family AT1G04360 30.714 1.06e-12 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g2515 - K10664 adu:107470824 90.1225