Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g2472 ATGGCTATGAGGATTGTAGCAATTTCGGCGGTTTCTACAGTGTTAAGCTTCCTGGGTCTACAATTTTGCACCGAGTTTTCATTAGATAAACTTAAATCAGATGGACTATTTGGCAAGAATTTTACTCACTTGGACAATGCCAGCCATGTCAGTGAGCTTCTTCTGGGCTCATACACCTCCATAGGGCTACTGGCAAATTTTATGATTAATGTATTCATCCTTCTCAATCTTTGTCTCAAGACTATTTTCTTCACAGAGCTGTATCCATCTGAAACTCGGAAACTGGTTGAGCGCCTCATTAATTATGTCATTTACAAGGGGACATTTCTACCACTTATTGTGCCTCCAACAATATATGAGACTGGTTTGTGGTCAACCTGGTTGATTGTGTTATGTTCTTTAAAGATGTTTCAAGCTTTGGTCAGAGATCGTTTGGATCGGCTGAATGCATCACCATCTGCTACACCCTGGACATATTTTCGTGTATATTCGGCATTGTTATTGGTTTTCTTCGTTGATGTTTTCTGGATATGGCTATGCCTGGCAATATATAAAACACATAGGACTTCTTTGTTTCTGTTACTATTCTTTGAGCCTTTCAGCATTGCTTTTGAGACCCTACAGGCCATCTTGGTACATGGATTTCAGTTGCTTGATATATGGCTCCATCATTCAGCATCCAACAGCACTGTTTGCCGAGGATCCAAACTCTTTGACCCATTTGGGGCAGGATCGTTATTGGAATGGAAGGGCGTTCTTATTCGGAATTTGGGGTTTCTCCTAGATATGGGAACTTTTGTTATGGCACTTGGTCATTACTTACATATTTGGTGGCTTCATGGCATGGCATTCCATCTTGTAGATGCAGTCCTATTTTTAAACATACGAGTAAATATTTCAGCATTGCTTGGTGCCATTATAAATCGCATAAAAGGCTTTGTCAGGTTACGAATAGCTCTAGGTGCACTTCATGCAGCTCTTCCTGATGCAACAGCTGAGGAGCTACGAGCATATGATGATGAATGTGCTATCTGTAGGGAACCCATGGCAAAGGCTAAAAAGCTCAACTGTAATCACCTCTTTCATCTTGCATGTTTGAGATCTTGGTTGGATCAAGGCCTAAATGAGATGTATACTTGTCCGACATGTCGAAAGCCCCTTTTTGTAGGCCGGCCTGAAAATGAGCCTAACACCAATACAGGGGAAATATCAGGTGATGAGCAGCTTGCACGTCAGATGAGTGCAGGACTTGATCGGCCTAACACTCCTAGAAATACCATGCCTGCAGGATTATATCCCAATCAGATGCCGAACTCTTTGGAAGGAACTCCTTGGAGGGGTGCAGGACTGGACTCTGGTTGGTTGCATACTTGGCCTAGTCAAGGTGTCGATGGAGCTGGTCCATCTACTGCAATTGGATCAGTTGGATTAGGGAGAGTTCAACTGATGATGAGGCATCTTGCATCAGTAGGAGAAACTTATGCTAATACTGCACTTGAAGATGCCGCATGGAGCCTTTGGCCAATTAATCCCTCTCAGGCTTCTGCAAGTGGTTCAAACATTCCTTCTCCTGGAAGTAGATTGCCTGGAGCCTCTGGTAGTTTACATGTGAGGACTGGCTCACGTTCTGCAAATGATGACTTGGAAAATATACTCGCTATGGCTGAGACAGTTCGGGAGGTTCTACCTCATATGCCAGATGATTTAATTTTCCAGGACTTGCAGCGGACAAATTCAGTCACAGTTACTGTGAATAATCTTCTCCAAATGTGA 1773 0.4303 MAMRIVAISAVSTVLSFLGLQFCTEFSLDKLKSDGLFGKNFTHLDNASHVSELLLGSYTSIGLLANFMINVFILLNLCLKTIFFTELYPSETRKLVERLINYVIYKGTFLPLIVPPTIYETGLWSTWLIVLCSLKMFQALVRDRLDRLNASPSATPWTYFRVYSALLLVFFVDVFWIWLCLAIYKTHRTSLFLLLFFEPFSIAFETLQAILVHGFQLLDIWLHHSASNSTVCRGSKLFDPFGAGSLLEWKGVLIRNLGFLLDMGTFVMALGHYLHIWWLHGMAFHLVDAVLFLNIRVNISALLGAIINRIKGFVRLRIALGALHAALPDATAEELRAYDDECAICREPMAKAKKLNCNHLFHLACLRSWLDQGLNEMYTCPTCRKPLFVGRPENEPNTNTGEISGDEQLARQMSAGLDRPNTPRNTMPAGLYPNQMPNSLEGTPWRGAGLDSGWLHTWPSQGVDGAGPSTAIGSVGLGRVQLMMRHLASVGETYANTALEDAAWSLWPINPSQASASGSNIPSPGSRLPGASGSLHVRTGSRSANDDLENILAMAETVREVLPHMPDDLIFQDLQRTNSVTVTVNNLLQM 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g2472 590 CDD CUE_RIN3_plant 551 588 IPR035667 -
Sto4g2472 590 ProSiteProfiles Zinc finger RING-type profile. 342 384 IPR001841 -
Sto4g2472 590 Pfam Ring finger domain 340 384 IPR001841 -
Sto4g2472 590 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 5 590 - -
Sto4g2472 590 ProSiteProfiles CUE domain profile. 550 590 IPR003892 GO:0043130
Sto4g2472 590 Pfam CUE domain 554 590 IPR003892 GO:0043130
Sto4g2472 590 SUPERFAMILY RING/U-box 330 391 - -
Sto4g2472 590 PANTHER E3 UBIQUITIN PROTEIN LIGASE RIN3 5 590 - -
Sto4g2472 590 MobiDBLite consensus disorder prediction 514 541 - -
Sto4g2472 590 Gene3D - 549 589 - -
Sto4g2472 590 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 316 391 IPR013083 -
Sto4g2472 590 SMART ring_2 342 383 IPR001841 -
Sto4g2472 590 CDD RING-H2_synoviolin 339 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g2472 Sto-Chr4 26109392 26116806 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g2472 58 402 C3H Transcription Factor Family AT3G16090 25.762 2.34e-27 114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto4g2472 4 26109392 26116806 Sto4g2472 4 26109392 26116806 ECH