Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sto4g2465 | ATGTGTGTTGGgttcaaccctaaacacttgaTGAAGTTGAGTTTCATGATGAACTCGTCTTTTTTGGAGGGCACACACTGGTCTTCTGCTGGTGCCACCTGGTATGGTGCCCCTAATGGTGCTGGAAGAGGAGCTTGTGGGTATGGCAAAATAGTGTCACAACCACCATTCTCTTCCATGGTGAAATGCACTGAGCATCCACGGTGTTCCGGCAAACCGGTGAGAGTAGTTATAACAGATTTCTGTCCAGGAGACCCTTGCTCGTCAGGACCTGCACACTTTGATTTGAGCGGAACTGCATTCGGTGCCATGGCAATTCGTGGCCGGGAAGATGAACTCCGTAGCGCCGGAGTTCTTGAAATTCGCTATGCTCGAATCCCATGTGATTACTCAGGAAAAACAATAGCATTTCACATAGATACGGGATCAAACCCTAATTACATAGCGATGGTAATAGAGTATGAAGAAGGAGATGGTGATCTTGGGAGTGTTGCTCTAATGGAGGAGAGCTCAGgagtgatgatgaagaagaagaagcattcATGGCGTACAATGCAACAGTCATGGGGTGCAGTTTGGAAGCTTGATGCAGGCTCACAGCTTCAAGCTCCGATCAGTATAAAACTAACCTCTCGGTATTCTGCAAAAACCCTAATTGCAAAAAATGTTATCCCAAAGGGCTGGAAGCCTGGTTCTACCTATAGATCCTTCGTTAATTACCTTTGA | 726 | 0.4366 | MCVGFNPKHLMKLSFMMNSSFLEGTHWSSAGATWYGAPNGAGRGACGYGKIVSQPPFSSMVKCTEHPRCSGKPVRVVITDFCPGDPCSSGPAHFDLSGTAFGAMAIRGREDELRSAGVLEIRYARIPCDYSGKTIAFHIDTGSNPNYIAMVIEYEEGDGDLGSVALMEESSGVMMKKKKHSWRTMQQSWGAVWKLDAGSQLQAPISIKLTSRYSAKTLIAKNVIPKGWKPGSTYRSFVNYL | 241 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sto4g2465 | 241 | ProSiteProfiles | Expansin, Cellulose-binding-like domain profile. | 146 | 236 | IPR007117 | - | |
| Sto4g2465 | 241 | PRINTS | Major pollen allergen Lol pI signature | 63 | 73 | IPR005795 | GO:0005576|GO:0019953 | |
| Sto4g2465 | 241 | PRINTS | Major pollen allergen Lol pI signature | 137 | 152 | IPR005795 | GO:0005576|GO:0019953 | |
| Sto4g2465 | 241 | PRINTS | Major pollen allergen Lol pI signature | 191 | 208 | IPR005795 | GO:0005576|GO:0019953 | |
| Sto4g2465 | 241 | PRINTS | Expansin/Lol pI family signature | 26 | 41 | IPR007118 | GO:0005576 | |
| Sto4g2465 | 241 | PRINTS | Expansin/Lol pI family signature | 182 | 196 | IPR007118 | GO:0005576 | |
| Sto4g2465 | 241 | PRINTS | Expansin/Lol pI family signature | 222 | 236 | IPR007118 | GO:0005576 | |
| Sto4g2465 | 241 | SUPERFAMILY | PHL pollen allergen | 133 | 236 | IPR036749 | - | |
| Sto4g2465 | 241 | Gene3D | - | 61 | 129 | IPR036908 | - | |
| Sto4g2465 | 241 | Gene3D | - | 11 | 60 | IPR036908 | - | |
| Sto4g2465 | 241 | PANTHER | EXPANSIN-B15-LIKE | 61 | 240 | - | - | |
| Sto4g2465 | 241 | PANTHER | EXPANSIN-B15-LIKE | 18 | 61 | - | - | |
| Sto4g2465 | 241 | Gene3D | - | 130 | 240 | IPR036749 | - | |
| Sto4g2465 | 241 | ProSiteProfiles | Expansin, family-45 endoglucanase-like domain profile. | 39 | 133 | IPR007112 | - | |
| Sto4g2465 | 241 | PANTHER | EXPANSIN-B3 | 18 | 61 | - | - | |
| Sto4g2465 | 241 | PANTHER | EXPANSIN-B3 | 61 | 240 | - | - | |
| Sto4g2465 | 241 | Pfam | Lytic transglycolase | 31 | 123 | IPR009009 | - | |
| Sto4g2465 | 241 | Pfam | Expansin C-terminal domain | 135 | 225 | IPR007117 | - | |
| Sto4g2465 | 241 | SUPERFAMILY | Barwin-like endoglucanases | 20 | 153 | IPR036908 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Sto4g2465 | Sto-Chr4 | 26045878 | 26047780 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Sto4g2465 | 5 | 240 | Expansin Gene Family | AT1G65680 | 45.736 | 9.12e-76 | 229 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sto4g2465 | - | - | qsu:112040054 | 335.109 |