Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g2423 ATGCCGAAGAAGAAACATCGTAGCGATAGCGATGAAGAAGACATCTTCTATTAccgcttttcttcttcttcttcttcttccgccGCCGCACCCACCACCACAACCCACAATAATCGCGGTGGCTCCGGTGGTCTAGCTCCCTCCAAATCCACCGTCTACGTCTCCAACATCGATTTCTCCCTCACCAACTCCGACCTCCACACCCTCTTCTCCACCTTCGGCAAAATCGCCCGAGTCACCGTTCTCAAGGATCGCCACACACGTCAGAGCCGTGGTGTTGCTTTCATTCAATTCGTCTCTCGCGACGATGCCCAAAAGGCCGCGCGAGAGATGAACCGCAAAATCCTCAACGGAAGGACCTTGACGGCTTCCATCGCCGCCGATAACGGCCGAGCACCGGAATTTATCAAGAAAAGGGTTTATAGGGATAAGAGTCGGTGTTATGAATGTGGGGAGGCTGGACATTTGTCTTATGAGTGTCCCAAGAATCAATTGGGGCCCAGGGAGCGGCCCATTCCGAAGCGCGAGCGACGCGGTGGTGGTAGCGGCGGCGGGAGCGGGTTCCGGCGCATTGAGGATGATGACGACGATGGATCGGACGGTGGAGATCATCGGTTTGAGGATGATAATTGGGCTTCTATTGTGGATGATGGGGCGGATGAGAGGTTGCTCAAAGGGAACGAGAAGGTTGCGGAGGAGAAGAAGGCGGCCAAGAAAGCAAGCTATTTCAGTGATGAGAGTGGTAAGGCGTAG 753 0.5232 MPKKKHRSDSDEEDIFYYRFSSSSSSSAAAPTTTTHNNRGGSGGLAPSKSTVYVSNIDFSLTNSDLHTLFSTFGKIARVTVLKDRHTRQSRGVAFIQFVSRDDAQKAAREMNRKILNGRTLTASIAADNGRAPEFIKKRVYRDKSRCYECGEAGHLSYECPKNQLGPRERPIPKRERRGGGSGGGSGFRRIEDDDDDGSDGGDHRFEDDNWASIVDDGADERLLKGNEKVAEEKKAAKKASYFSDESGKA 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g2423 250 Gene3D - 137 171 - -
Sto4g2423 250 SMART rrm1_1 51 124 IPR000504 GO:0003723
Sto4g2423 250 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 8 248 - -
Sto4g2423 250 ProSiteProfiles Zinc finger CCHC-type profile. 146 162 IPR001878 GO:0003676|GO:0008270
Sto4g2423 250 CDD RRM_ZCRB1 49 126 IPR034219 -
Sto4g2423 250 SUPERFAMILY Retrovirus zinc finger-like domains 131 163 IPR036875 GO:0003676|GO:0008270
Sto4g2423 250 SUPERFAMILY RNA-binding domain, RBD 47 133 IPR035979 GO:0003676
Sto4g2423 250 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 52 121 IPR000504 GO:0003723
Sto4g2423 250 MobiDBLite consensus disorder prediction 21 46 - -
Sto4g2423 250 SMART c2hcfinal6 146 162 IPR001878 GO:0003676|GO:0008270
Sto4g2423 250 Gene3D - 23 207 IPR012677 -
Sto4g2423 250 MobiDBLite consensus disorder prediction 159 213 - -
Sto4g2423 250 Pfam Zinc knuckle 146 162 IPR001878 GO:0003676|GO:0008270
Sto4g2423 250 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 50 128 IPR000504 GO:0003723
Sto4g2423 250 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 8 248 IPR044598 GO:0000398|GO:0005689
Sto4g2423 250 SMART rrm2_1 51 124 IPR003954 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g2423 Sto-Chr4 25623544 25624371 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g2423 50 126 Eukaryotic Initiation Factors Gene Family AT4G34110 29.870 4.43e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g2423 K13154 - twl:120005174 308.531