Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g2399 ATGAATTTGTTTAGGGTTGTTTCTTGGGTGTTCCTGTTCATCACAGTACCCCCATATGTGGTAAGTGATAATGTCTCAAGACCTGATTTTGTGCATATTGGAGCTATCTTCACCTTTGATTCTACTATTGGGAAAGTCGCAAAAATCGCAATGGAGGAAGCAGTGAAGGATGTAAATGCCAATGATAGCATCCTCAATGGGACTAAACTTGTCCTCACCATGCAAAATTCCAATTGCAGTGGCTTTGTAGGCATGGTTCAAGCCTTAAGGTTCATGGAGACTGATGTCATTGGAATTATAGGTCCACAATCTTCAGTAGTTGCCCACATAATATCCCATGTTGCAAATGAGCTCCAAGTCCCTCTTTTGTCCTTTGCAGCAACAGACCCTACTCTCTCTTCTCTGCAGTTCCCGTTTTTCGTGAGGACAACCATGGATGATTCGTATCAAATGACAGCAGTTGCTGAAATTGTTGACTACTATGGCTGGAAGGAGGTCATTGCTATATTTGTAGATGAGGACTATGGGCGTAATGGCGTGTCGGCGTTAGATGATCAACTAGCAGCTAGGCGCTGTAGGATCTCTTACAAGGCAGGAATTAGTTCGGGCCCTGGAGTTGATCGGGGTGAAATCATGGATTTGCTGGTGAAGGTGGCACTAATGCAATCTAGGATCATTGTTCTCCATGTTAATCCTGAttcaggatttatggttttcagGGTGGCTCAATATCTTGGCATGACTGGCGAAGGCTATGTCTGGATAGCCACGGACTGGCTCTCTTCTGTTCTTGATTCTACTTCTCTTCCTTCAGAGACAATGGATGTGATGCAAGGTGTTCTTGTTTTACGCCAACATACACCCGACTCGAATAGGAAAAGAACATTTCTGTCTAGGTGGAACAAGCTCACTAGTGGCTCCTTGGGGTTACATTCTTATGGACTCTATGCATATGATTCTGTTTGGCTGCTTGCATATGCTATTGATGCATTCTTCAACCAAGGCGGGATCATATCATTTTCTAATGACTCTAGGATACATGATGTTGAGAGAGGTAATCTTAACCTTGAGGCAATGAGCATTTTTGACAATGGAACACTTCTGTTGAAGAACATACTGCAGAGCAATTTTGTCGGTTTAACTGGCCCTATGAAATTCAACTCAGAAAAATCTCTTGTTAGTCCTGcatatgatgttattaatgtgGTGGGGACCGGAATTCGTATTGTTGGATACTGGTCTAACTATTCTGGTCTGTCCATTGTCCCTCCTGAGACATTGTATGCTAAGCCTCCTAATCGTTCTAGTTCAAACCAACAACTGCACAGTGTAATATGGCCGGGAGAAACATTATCAAAACCCCGTGGATGGGTTTTTCCAAATAATGGAAAACAATTGAGAATTGGTGTGCCTCTCCGGATCAGTTACCACGAATTTGTATCACCAGTGCAAGGAACTGATATGTTTAAAGGTTTCTGTATTGATGTATTCACAGCAGCTGTAAGCTTATTACCATATGCTGTTCCCTATCATTTTGTCCCATTTGGAAATGGTCATGAAAACCCAAGCTACACTGAACTTGTCAACTTGATCACCACAGGTTACTTTGATGGTGCTGTTGGTGACATTGCCATTGTCACAAATAGGACGAAGATTGTAGATTTCACCCAGCCGTATGCTGCATCTGGACTCGTGGTGGTGGCTCCTTTTAAGAAAACGAAATCCGGTGGTTGGTCTTTCCTGCGGCCGTTTACTCCTCTTATGTGGATTGTCActacttctttcttctttttcattggAATAGTTGTGTGGATTCTGGAGCATAGAATAAATGATGAGTTCAGGGGTCCGCCTAAACAACAAATTATAACCATTTTATGGTTTAGCTTGTCAACTCTATTTTTTGCCCACAGAGAGAATACCATGAGTACTCTCGGCCGCTTGGTGGTGATCATATGGTTGTTTGTGGTTTTGATAATCAACTCCAGCTACACTGCAAGTTTGACATCAATCCTCACAGTGCAACAGCTATCTTCTCCCATTAATGGAATAGATAGCTTGAAATCCAGTGATGAACCTATAGGGTACCAAGTGGGTTCGTTTGCTGAACGATATTTGACAGAGGATATTGGAATATCAAAATCTAGGCTCGTTGCCCTCGGATCTCCGGAAGCATACGCCACGGCACTCCAGCGTGGTCCAGAAAAGGGAGGTGTTGCTGCCATTGTTGATGAACGACCCTATGTGGAAAGTTTTTTATCAACCCAATGCACATTCAGGATAGTGGGTCAGGAGTTCACTAGAAGTGGCTGGGGGTTTGCATTCCCAAGGGACTCTCCTTTGGCTGTAGATTTTTCAACTGCAATTCTGCAACTTTCCGAAAACGGCGAACTGCAGCGAATTCACGACAAATGGCTTGTACGAAGCGCGTGCAGTTTAGATACTGCCGAAATCGATTCGGATCGGCTTCGGTTTAAAAGCTTCTGGGGTCTCTTTCTTATCTGTGGAATAGCTTGCATTATTGCTCTCTCCATATATTTTCTGCAGATTGTGCTCAAGTTACGCCATTCTAGTCCTACTGATCAACCTGCATCTTCCAATGTGAGCTCAGTCTCTGGACGCTTTCAGAGATTTCTTTCACTGATGGATGGGAAGGAAGAGAGGTCCATTAGTAATGGAAGTAGAAAGAGAAGCCAGAGATCATTAGAAGATGAAGTTGGGAGGCAATCAAAGAGGATTCAATTCAATTTTAACACAAAGTAA 2763 0.4231 MNLFRVVSWVFLFITVPPYVVSDNVSRPDFVHIGAIFTFDSTIGKVAKIAMEEAVKDVNANDSILNGTKLVLTMQNSNCSGFVGMVQALRFMETDVIGIIGPQSSVVAHIISHVANELQVPLLSFAATDPTLSSLQFPFFVRTTMDDSYQMTAVAEIVDYYGWKEVIAIFVDEDYGRNGVSALDDQLAARRCRISYKAGISSGPGVDRGEIMDLLVKVALMQSRIIVLHVNPDSGFMVFRVAQYLGMTGEGYVWIATDWLSSVLDSTSLPSETMDVMQGVLVLRQHTPDSNRKRTFLSRWNKLTSGSLGLHSYGLYAYDSVWLLAYAIDAFFNQGGIISFSNDSRIHDVERGNLNLEAMSIFDNGTLLLKNILQSNFVGLTGPMKFNSEKSLVSPAYDVINVVGTGIRIVGYWSNYSGLSIVPPETLYAKPPNRSSSNQQLHSVIWPGETLSKPRGWVFPNNGKQLRIGVPLRISYHEFVSPVQGTDMFKGFCIDVFTAAVSLLPYAVPYHFVPFGNGHENPSYTELVNLITTGYFDGAVGDIAIVTNRTKIVDFTQPYAASGLVVVAPFKKTKSGGWSFLRPFTPLMWIVTTSFFFFIGIVVWILEHRINDEFRGPPKQQIITILWFSLSTLFFAHRENTMSTLGRLVVIIWLFVVLIINSSYTASLTSILTVQQLSSPINGIDSLKSSDEPIGYQVGSFAERYLTEDIGISKSRLVALGSPEAYATALQRGPEKGGVAAIVDERPYVESFLSTQCTFRIVGQEFTRSGWGFAFPRDSPLAVDFSTAILQLSENGELQRIHDKWLVRSACSLDTAEIDSDRLRFKSFWGLFLICGIACIIALSIYFLQIVLKLRHSSPTDQPASSNVSSVSGRFQRFLSLMDGKEERSISNGSRKRSQRSLEDEVGRQSKRIQFNFNTK 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g2399 920 Pfam Receptor family ligand binding region 49 404 IPR001828 -
Sto4g2399 920 PIRSF IGluLR_plant 1 918 IPR017103 -
Sto4g2399 920 Pfam Ligand-gated ion channel 807 839 IPR001320 GO:0015276|GO:0016020
Sto4g2399 920 SMART GluR_14 467 808 IPR001320 GO:0015276|GO:0016020
Sto4g2399 920 PANTHER GLUTAMATE RECEPTOR 3.3 16 915 - -
Sto4g2399 920 Gene3D - 49 394 - -
Sto4g2399 920 SUPERFAMILY Periplasmic binding protein-like I 26 457 IPR028082 -
Sto4g2399 920 CDD GluR_Plant 464 806 - -
Sto4g2399 920 Gene3D - 461 575 - -
Sto4g2399 920 SUPERFAMILY Periplasmic binding protein-like II 443 808 - -
Sto4g2399 920 Gene3D - 576 705 - -
Sto4g2399 920 Gene3D - 754 813 - -
Sto4g2399 920 PRINTS Metabotropic glutamate GPCR signature 99 125 IPR000337 GO:0004930|GO:0007186|GO:0016021
Sto4g2399 920 PRINTS Metabotropic glutamate GPCR signature 131 150 IPR000337 GO:0004930|GO:0007186|GO:0016021
Sto4g2399 920 PRINTS Metabotropic glutamate GPCR signature 150 166 IPR000337 GO:0004930|GO:0007186|GO:0016021
Sto4g2399 920 PRINTS Metabotropic glutamate GPCR signature 166 183 IPR000337 GO:0004930|GO:0007186|GO:0016021
Sto4g2399 920 CDD PBP1_GABAb_receptor_plant 32 423 IPR044440 -
Sto4g2399 920 Pfam Bacterial extracellular solute-binding proteins, family 3 487 806 IPR001638 -
Sto4g2399 920 MobiDBLite consensus disorder prediction 883 910 - -
Sto4g2399 920 MobiDBLite consensus disorder prediction 883 920 - -
Sto4g2399 920 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 16 915 - -
Sto4g2399 920 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 44 60 - -
Sto4g2399 920 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 104 132 - -
Sto4g2399 920 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 317 329 - -
Sto4g2399 920 Gene3D - 146 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g2399 Sto-Chr4 25419788 25424165 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g2399 9 912 Ion Channels AT1G42540 66.157 0.0 1262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g2399 K05387 - gmx:100777478 1449.49